CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16903	Soybean	nucleus	85.52	86.72
KRH57272	Soybean	cytosol	16.16	63.04
KRH29762	Soybean	plastid	10.86	32.77
KRH21700	Soybean	nucleus	35.38	28.86
KRH49860	Soybean	nucleus	37.6	28.54
KRH42038	Soybean	cytosol	37.6	28.36
KRH10652	Soybean	cytosol	35.1	28.25
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	30.64	26.57
KRH54323	Soybean	cytosol, nucleus, plastid	13.65	26.34
KRH63619	Soybean	plastid	14.21	26.29
KRH03222	Soybean	cytosol	13.37	24.24
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	20.06	24.24
KRH69636	Soybean	plastid	13.93	23.58
KRH45586	Soybean	plastid	11.42	22.53
KRH26304	Soybean	nucleus	16.16	22.22
KRH74522	Soybean	nucleus	14.21	22.08
KRH06059	Soybean	nucleus	16.43	22.01
KRH41951	Soybean	nucleus	25.07	21.38
KRH49930	Soybean	nucleus	24.79	20.99
TraesCS6A01G380500.1	Wheat	cytosol	30.92	20.86
Zm00001d051939_P001	Maize	cytosol	30.92	20.63
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	30.92	20.15
GSMUA_Achr1P05710_001	Banana	cytosol	27.3	20.12
Zm00001d018447_P001	Maize	extracellular	29.8	19.53
TraesCS6B01G419500.1	Wheat	cytosol	26.74	19.47
EES07730	Sorghum	cytosol	30.64	19.43
TraesCS6D01G365200.1	Wheat	cytosol	26.46	19.43
KRH39133	Soybean	cytosol	25.63	13.75
KRH35888	Soybean	nucleus	26.74	13.58
KRH48572	Soybean	cytosol	23.4	13.1
KRG90906	Soybean	nucleus, plastid	26.18	13.04
KRH38173	Soybean	nucleus	21.73	11.96

Protein Annotations

EMBL:ACUP02001217	EnsemblPlants:KRH72507	EnsemblPlantsGene:GLYMA_02G217500	EntrezGene:102666247	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF5
PFAM:PF00564	ProteinID:KRH72507	ProteinID:KRH72507.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277
UniParc:UPI0001BA38AD	UniProt:I1JH30	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:40431668..40433295

Molecular Weight (calculated)

39532.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.676

Length

359 amino acids

Sequence
(BLAST)

001: MDSRDSSPRS RDPDADNNNN HHHHRRQPSL DDAPPKVKLM CSFGGSIQPR PHDNHLTYVS GDTKILAVDR HVKFPSLIAK LSSLANNTPS NLSFFKYQLP
101: GEDLDALISV TNDDDLHQMM IEYDRLSRAS PRPARLRLFL FPLHNNCNFA PTESKSERQW FVDALNSVHV PEDSPPPPPA TANPDFLFGL DKPAAEDALA
201: KDSECFPEDR EAEPQIENEN NSKQLLQRKM KIEEDDNNNK GRVYGVNGGG DCYAQKNAEK MTPLVAHAHA HAHAQFVHPG SVTGTVSFMQ ERNNNNAGYS
301: LAFATTGNEI YLIQTPSGMF QAVRPVTGPV GQPVYLVHAP GPVSHSKVGA AVHGGDGRI

Best Arabidopsis Sequence Match ( AT5G09620.1 )
(BLAST)

001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.