Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48161 | Canola | plastid | 77.22 | 75.96 |
| Bra018071.1-P | Field mustard | plastid | 77.22 | 75.96 |
| CDY39571 | Canola | plastid | 75.56 | 74.32 |
| AT5G63130.2 | Thale cress | nucleus | 63.89 | 59.9 |
| VIT_17s0000g09190.t01 | Wine grape | cytosol, nucleus, plastid | 38.89 | 44.03 |
| AT1G70640.1 | Thale cress | cytosol | 41.11 | 42.53 |
| PGSC0003DMT400069641 | Potato | mitochondrion | 40.0 | 41.62 |
| KRH54323 | Soybean | cytosol, nucleus, plastid | 42.78 | 41.4 |
| KRH63619 | Soybean | plastid | 43.89 | 40.72 |
| KRH03222 | Soybean | cytosol | 44.44 | 40.4 |
| Solyc06g071750.2.1 | Tomato | plastid | 41.11 | 38.34 |
| PGSC0003DMT400046652 | Potato | plastid | 41.67 | 37.88 |
| AT5G49920.1 | Thale cress | nucleus | 32.22 | 20.14 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 26.11 | 17.28 |
| AT4G05150.1 | Thale cress | nucleus | 28.33 | 10.69 |
| AT5G64430.1 | Thale cress | nucleus | 29.44 | 10.33 |
| AT5G09620.1 | Thale cress | nucleus | 29.44 | 9.98 |
| AT5G16220.1 | Thale cress | plastid | 24.44 | 9.24 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 33.89 | 8.47 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 28.89 | 7.81 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:823982 | UniProt:A0A178VGU0 | ProteinID:AEE78390.1 | ArrayExpress:AT3G48240 |
| EnsemblPlantsGene:AT3G48240 | RefSeq:AT3G48240 | TAIR:AT3G48240 | RefSeq:AT3G48240-TAIR-G | EnsemblPlants:AT3G48240.1 | TAIR:AT3G48240.1 |
| EMBL:BT014807 | EMBL:BT015699 | ProteinID:CAB41174.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | RefSeq:NP_190407.1 | ProteinID:OAP04545.1 | InterPro:PB1_dom | PFAM:PF00564 | PANTHER:PTHR31066 |
| PANTHER:PTHR31066:SF10 | UniProt:Q9STK4 | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI00000AA3C3 | SEG:seg |
Description
At3g48240 [Source:UniProtKB/TrEMBL;Acc:Q9STK4]
Coordinates
chr3:+:17867131..17868460
Molecular Weight (calculated)
20055.2 Da
IEP (calculated)
9.058
GRAVY (calculated)
-0.342
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVAENQKT KNSLKFLCSY GGRILPRSID GKLRYVGGFT RVLSVHHSIS FTELTMKLEE FCGYSVELKC QLPNGDLETL ISVKSDEDLV NIVEEYDRVY
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ
101: GGKIRAILSP PKQMSPRSSG GGGDLSPKSP FSVVASPSPP RYCVAPPTEN LLSRFRMRTG EYSRCCNCRV PNRDSKLIWQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.