Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41501 | Canola | cytosol | 82.29 | 83.6 |
| Bra038608.1-P | Field mustard | nucleus | 82.81 | 81.96 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 80.21 | 80.63 |
| CDX84387 | Canola | nucleus | 82.29 | 80.61 |
| CDY72321 | Canola | plastid | 73.44 | 78.77 |
| Bra035855.1-P | Field mustard | cytosol | 77.08 | 77.49 |
| AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 59.9 | 63.89 |
| VIT_17s0000g09190.t01 | Wine grape | cytosol, nucleus, plastid | 39.58 | 47.8 |
| KRH54323 | Soybean | cytosol, nucleus, plastid | 45.83 | 47.31 |
| KRH63619 | Soybean | plastid | 46.35 | 45.88 |
| PGSC0003DMT400069641 | Potato | mitochondrion | 39.06 | 43.35 |
| AT1G70640.1 | Thale cress | cytosol | 38.02 | 41.95 |
| KRH03222 | Soybean | cytosol | 42.19 | 40.91 |
| Solyc06g071750.2.1 | Tomato | plastid | 39.06 | 38.86 |
| PGSC0003DMT400046652 | Potato | plastid | 39.58 | 38.38 |
| AT5G49920.1 | Thale cress | nucleus | 32.29 | 21.53 |
| AT1G25300.1 | Thale cress | cytosol, nucleus, plasma membrane | 26.04 | 18.38 |
| AT5G64430.1 | Thale cress | nucleus | 31.77 | 11.89 |
| AT5G09620.1 | Thale cress | nucleus | 29.17 | 10.55 |
| AT4G05150.1 | Thale cress | nucleus | 25.52 | 10.27 |
| AT5G16220.1 | Thale cress | plastid | 22.4 | 9.03 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 32.29 | 8.61 |
| AT3G18230.1 | Thale cress | nucleus, plastid | 26.56 | 7.66 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | EntrezGene:836433 | UniProt:A0A178ULW6 | ProteinID:AED97708.1 | EMBL:AK117358 |
| ProteinID:ANM68671.1 | ArrayExpress:AT5G63130 | EnsemblPlantsGene:AT5G63130 | RefSeq:AT5G63130 | TAIR:AT5G63130 | RefSeq:AT5G63130-TAIR-G |
| EnsemblPlants:AT5G63130.2 | ProteinID:BAB10555.1 | EMBL:BT003726 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | RefSeq:NP_001318869.1 | RefSeq:NP_201118.1 | ProteinID:OAO94713.1 | InterPro:PB1_dom | PFAM:PF00564 |
| PANTHER:PTHR31066 | PANTHER:PTHR31066:SF10 | UniProt:Q9FML0 | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI000000C12A |
| SEG:seg | : | : | : | : | : |
Description
At5g63130 [Source:UniProtKB/TrEMBL;Acc:Q9FML0]
Coordinates
chr5:+:25322975..25324739
Molecular Weight (calculated)
21547.5 Da
IEP (calculated)
8.547
GRAVY (calculated)
-0.562
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAVDYTEKN SGSSLKFLCS YGGRILPRST DGKLRYVGGH TRVLSVDRSI SFSELMKKLY EFCGYSVDLR CQLPNGDLET LISVKSEEEL AEIVEEYDRI
101: CGAKIRAVLS PPRSSHKTES SPSSSGDRSP KSPFSVTPSP PNSPSPAYGR YLQSRYCLPS TDLPPRRYIQ RAEESHCCYA CRVHKDSRLV WH
101: CGAKIRAVLS PPRSSHKTES SPSSSGDRSP KSPFSVTPSP PNSPSPAYGR YLQSRYCLPS TDLPPRRYIQ RAEESHCCYA CRVHKDSRLV WH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.