Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra010988.1-P | Field mustard | cytosol, nucleus, plasma membrane | 62.5 | 65.38 |
CDY36115 | Canola | cytosol, nucleus, vacuole | 62.13 | 65.25 |
CDY24410 | Canola | cytosol | 59.19 | 62.4 |
Zm00001d003965_P001 | Maize | mitochondrion | 18.01 | 44.55 |
HORVU3Hr1G008310.1 | Barley | cytosol | 15.81 | 30.07 |
AT1G70640.1 | Thale cress | cytosol | 18.75 | 29.31 |
AT3G48240.1 | Thale cress | cytosol, nucleus, plastid | 17.28 | 26.11 |
AT5G63130.2 | Thale cress | nucleus | 18.38 | 26.04 |
GSMUA_Achr10P... | Banana | nucleus | 26.1 | 21.01 |
GSMUA_AchrUn_... | Banana | nucleus | 28.68 | 20.21 |
AT5G49920.1 | Thale cress | nucleus | 19.85 | 18.75 |
GSMUA_Achr8P18320_001 | Banana | nucleus | 32.35 | 16.99 |
GSMUA_Achr2P07240_001 | Banana | nucleus | 31.25 | 15.45 |
AT5G16220.1 | Thale cress | plastid | 26.84 | 15.34 |
GSMUA_Achr1P21240_001 | Banana | nucleus | 31.62 | 14.33 |
EES00348 | Sorghum | nucleus | 34.19 | 14.03 |
Zm00001d008591_P001 | Maize | mitochondrion | 33.46 | 13.68 |
Zm00001d039916_P010 | Maize | nucleus | 33.09 | 13.66 |
AT2G01190.1 | Thale cress | nucleus, plastid | 36.03 | 13.61 |
GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 34.93 | 13.57 |
AT3G18230.1 | Thale cress | nucleus, plastid | 32.72 | 13.36 |
Os01t0139200-01 | Rice | nucleus | 32.35 | 13.11 |
AT4G05150.1 | Thale cress | nucleus | 22.79 | 13.0 |
AT5G09620.1 | Thale cress | nucleus | 25.37 | 12.99 |
GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 33.46 | 12.94 |
AT5G64430.1 | Thale cress | nucleus | 23.9 | 12.67 |
TraesCS3D01G050900.1 | Wheat | nucleus | 30.15 | 12.37 |
TraesCS3B01G060500.1 | Wheat | cytosol | 29.41 | 12.08 |
TraesCS3A01G051800.1 | Wheat | nucleus | 31.25 | 12.07 |
HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 31.62 | 10.17 |
Protein Annotations
MapMan:35.2 | EntrezGene:839114 | ProteinID:AAG28810.1 | ProteinID:AEE30604.1 | ArrayExpress:AT1G25300 | EnsemblPlantsGene:AT1G25300 |
RefSeq:AT1G25300 | TAIR:AT1G25300 | RefSeq:AT1G25300-TAIR-G | EnsemblPlants:AT1G25300.1 | TAIR:AT1G25300.1 | Unigene:At.51764 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000270 | RefSeq:NP_173901.1 | InterPro:PB1_dom |
PFAM:PF00564 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF27 | UniProt:Q9FRH9 | SMART:SM00666 | SUPFAM:SSF54277 |
UniParc:UPI000009E34F | SEG:seg | : | : | : | : |
Description
Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q9FRH9]
Coordinates
chr1:+:8871568..8872386
Molecular Weight (calculated)
30604.6 Da
IEP (calculated)
5.603
GRAVY (calculated)
-0.316
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPQPSLNPK LHLLCSYGGR IMPLPPEKSL HYIGGETRLV IVPRGISFLD FFKLLSDKLL SGRSFSLKYK LPSCDFDSLI TVSDNEDLQN MIAEYDSTRL
101: RRIRLFLFPL NHVELTRQSV TVNRLLGLES PIFTSLSSVL SSPIFAPNNG PVQFVHHNKV NATTAEENRR QDEAASTTSS SMLPQENTSA ANDVGGFLDR
201: ETEIVEIQDQ PRPILQEPLP QQQQQPLIIC YLPVWQMRPH MVTYPVAAYA LTPATEHSPR LDPVPENQEN AT
101: RRIRLFLFPL NHVELTRQSV TVNRLLGLES PIFTSLSSVL SSPIFAPNNG PVQFVHHNKV NATTAEENRR QDEAASTTSS SMLPQENTSA ANDVGGFLDR
201: ETEIVEIQDQ PRPILQEPLP QQQQQPLIIC YLPVWQMRPH MVTYPVAAYA LTPATEHSPR LDPVPENQEN AT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.