Factsheet for TraesCS3D01G050900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G110900.1
TraesCS1D01G203800.1
TraesCS2A01G245600.1
TraesCS2B01G143000.1
TraesCS2B01G427400.1
TraesCS3A01G305600.1
TraesCS3B01G330900.1
TraesCS3D01G296300.1
TraesCS4A01G427300.1
TraesCS4A01G428300.1
TraesCS5B01G340700.1
TraesCS6A01G412800.1
TraesCS6B01G462100.1
TraesCS6D01G397000.1
TraesCS7A01G061500.1
TraesCS7A01G284100.1
TraesCS7D01G056400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01190.1	TraesCS1B01G110900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS1D01G203800.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2A01G245600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G143000.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS2B01G427400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3A01G305600.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3B01G330900.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS3D01G296300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G427300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS4A01G428300.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS5B01G340700.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G061500.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7A01G284100.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS7D01G056400.1	AT3G16120.1	21798944
AT2G01190.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT2G01190.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G008310.1	Barley	cytosol	20.66	95.8
TraesCS3A01G051800.1	Wheat	nucleus	94.57	89.06
TraesCS3B01G060500.1	Wheat	cytosol	88.24	88.37
Zm00001d003965_P001	Maize	mitochondrion	13.73	82.73
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	93.21	73.05
Os01t0139200-01	Rice	nucleus	73.15	72.28
EES00348	Sorghum	nucleus	71.34	71.34
Zm00001d039916_P010	Maize	nucleus	70.29	70.71
Zm00001d008591_P001	Maize	mitochondrion	70.14	69.92
GSMUA_AchrUn_...	Banana	nucleus	35.14	60.36
GSMUA_Achr10P...	Banana	nucleus	27.45	53.85
GSMUA_Achr2P07240_001	Banana	nucleus	39.52	47.64
GSMUA_Achr8P18320_001	Banana	nucleus	36.95	47.3
GSMUA_Achr1P21240_001	Banana	nucleus	40.57	44.83
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	46.46	44.0
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	43.74	41.25
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	13.42	34.23
VIT_01s0011g04140.t01	Wine grape	nucleus	35.9	34.15
CDY36115	Canola	cytosol, nucleus, vacuole	13.27	33.98
CDY24410	Canola	cytosol	12.97	33.33
VIT_17s0000g03180.t01	Wine grape	nucleus	31.98	33.23
KRG90906	Soybean	nucleus, plastid	35.29	32.45
KRH35888	Soybean	nucleus	34.54	32.39
PGSC0003DMT400015310	Potato	nucleus	31.37	31.56
Solyc05g008830.2.1	Tomato	nucleus	30.17	31.1
TraesCS2D01G214600.1	Wheat	plastid	17.5	31.1
CDY68695	Canola	nucleus	25.79	31.09
Solyc03g118870.2.1	Tomato	nucleus	29.26	30.46
KRH48572	Soybean	cytosol	29.26	30.27
CDY25942	Canola	nucleus, plastid	28.66	30.25
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	12.37	30.15
KRH39133	Soybean	cytosol	30.32	30.04
Solyc04g007460.2.1	Tomato	plastid	30.77	29.91
Bra017462.1-P	Field mustard	cytosol, plastid	28.81	29.75
CDY41073	Canola	nucleus, plastid	28.21	29.64
AT2G01190.1	Thale cress	nucleus, plastid	32.13	29.58
Bra024899.1-P	Field mustard	nucleus, plastid	32.28	29.48
KRH38173	Soybean	nucleus	28.51	28.99
PGSC0003DMT400014442	Potato	nucleus	29.71	28.76
CDY40994	Canola	cytosol	24.59	28.6
CDY17690	Canola	nucleus, plastid	31.22	28.59
CDY24442	Canola	cytosol	24.59	28.55
Bra022297.1-P	Field mustard	nucleus	24.59	28.45
CDX92217	Canola	cytosol	24.89	28.16
VIT_14s0006g02490.t01	Wine grape	nucleus	22.02	28.13
Bra022296.1-P	Field mustard	cytosol	25.04	28.04
Bra037596.1-P	Field mustard	nucleus	26.7	27.53
CDY66514	Canola	nucleus	26.7	27.48
AT3G18230.1	Thale cress	nucleus, plastid	27.6	27.48
Solyc02g086360.2.1	Tomato	cytosol	23.08	27.47
PGSC0003DMT400067817	Potato	cytosol	23.08	27.47
Bra006344.1-P	Field mustard	plastid	14.33	26.76
TraesCS6D01G198500.1	Wheat	plastid	7.69	25.5
AT5G16220.1	Thale cress	plastid	17.65	24.58
CDX70680	Canola	plastid	16.74	24.08
CDX78676	Canola	plastid	16.14	23.83
Bra008633.1-P	Field mustard	plastid	17.04	23.3
CDX69461	Canola	plastid	17.04	23.3
TraesCS4D01G029100.1	Wheat	plastid	8.6	23.17
TraesCS1D01G267100.1	Wheat	nucleus	10.86	19.67
TraesCS6D01G365200.1	Wheat	cytosol	12.22	16.56

Protein Annotations

EnsemblPlants:TraesCS3D01G050900.1	EnsemblPlantsGene:TraesCS3D01G050900	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	ncoils:Coil	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:

Description

No Description!

Coordinates

chr3D:-:19959516..19962132

Molecular Weight (calculated)

71152.7 Da

IEP (calculated)

5.562

GRAVY (calculated)

-0.733

Length

663 amino acids

Sequence
(BLAST)

001: MDSAPPAAGG GPGAGYPEST DSSPRSRGGD SWDEPFPSSA AAAAAGGGGR LRLMCSFGGR IVPRPTDKSL CYLGGETRIV AVDRNASLAD VHGRLSRSLL
101: AGQPFTLKYQ LPNEDLDSLI SVSTDEDLDN LVDEYDRVAA TSSSGGGASR TSRIRLFLFP AKPESSSSLG SLLDDSSKSE NWFVDALNSA ISGSFDGIPR
201: GISTDSASVN CLLGLEDDNA SQHSRSGVPN SGPAEDQRAN QQKLAAAARH QHDVQSVPDS PMLDKNSSFG STSSAPSLSN LPPIRVRPED RQPVAPPVSV
301: EDHFAQMGIS EQQGLPPPVM GYMQPPPQAP IPAMAMQAAS SISPSEPPSR AFSDDDRSDH GGRMQQPPKQ EVPPTADPNN RAMFYNDMSP RNEMKRDMPV
401: GTDAASYRAP APAPDAATSA AAAQPPPGYV YAQMQPQQQL QQPPQQQLQQ QQQLQQQQQL QQQAQQQLPQ QIQQQPQQQL PPQLQQQAQQ QQAQQQPPQP
501: QQAHQPAPQQ YVTAGNQHFI HNPATGTFIP IQSYYQQTVP QQAPQQQQSP AFDPNTGMYY IPMQRPNAPQ QYSIPAGAVA PMAAPTLVDS VPKPTVPIPQ
601: QYMKPELQQP GMYRTAAPAA PAPGANTAPN YAGMGYHHVM QSHHHPGESI CRCCSKLGWK EGL

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.