Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra022296.1-P | Field mustard | cytosol | 100.0 | 96.79 |
CDY40994 | Canola | cytosol | 88.31 | 88.77 |
Bra037596.1-P | Field mustard | nucleus | 77.84 | 69.36 |
AT3G18230.1 | Thale cress | nucleus, plastid | 73.3 | 63.06 |
Zm00001d003965_P001 | Maize | mitochondrion | 9.95 | 51.82 |
HORVU3Hr1G008310.1 | Barley | cytosol | 11.87 | 47.55 |
GSMUA_AchrUn_... | Banana | nucleus | 25.48 | 37.82 |
GSMUA_Achr10P... | Banana | nucleus | 21.47 | 36.39 |
Bra010988.1-P | Field mustard | cytosol, nucleus, plasma membrane | 16.4 | 36.15 |
KRH39133 | Soybean | cytosol | 41.36 | 35.43 |
KRH48572 | Soybean | cytosol | 39.09 | 34.95 |
VIT_17s0000g03180.t01 | Wine grape | nucleus | 38.57 | 34.64 |
PGSC0003DMT400014442 | Potato | nucleus | 40.14 | 33.58 |
Solyc03g118870.2.1 | Tomato | nucleus | 37.17 | 33.44 |
Bra025209.1-P | Field mustard | mitochondrion | 10.3 | 32.6 |
Bra024899.1-P | Field mustard | nucleus, plastid | 39.62 | 31.27 |
GSMUA_Achr8P18320_001 | Banana | nucleus | 27.92 | 30.89 |
Bra032936.1-P | Field mustard | plastid | 9.6 | 30.73 |
GSMUA_Achr2P07240_001 | Banana | nucleus | 28.97 | 30.18 |
Bra017462.1-P | Field mustard | cytosol, plastid | 33.68 | 30.06 |
Bra016197.1-P | Field mustard | mitochondrion | 8.55 | 29.52 |
Bra038608.1-P | Field mustard | nucleus | 9.42 | 27.84 |
Bra029559.1-P | Field mustard | nucleus | 19.02 | 27.59 |
Bra018071.1-P | Field mustard | plastid | 8.73 | 27.32 |
GSMUA_Achr1P21240_001 | Banana | nucleus | 28.27 | 27.0 |
GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 31.76 | 26.0 |
Zm00001d039916_P010 | Maize | nucleus | 29.67 | 25.8 |
Bra018513.1-P | Field mustard | nucleus | 19.72 | 25.45 |
Bra006344.1-P | Field mustard | plastid | 15.71 | 25.35 |
EES00348 | Sorghum | nucleus | 29.32 | 25.34 |
Os01t0139200-01 | Rice | nucleus | 29.32 | 25.04 |
Zm00001d008591_P001 | Maize | mitochondrion | 28.97 | 24.96 |
Bra035855.1-P | Field mustard | cytosol | 8.2 | 24.61 |
TraesCS3D01G050900.1 | Wheat | nucleus | 28.45 | 24.59 |
Bra000599.1-P | Field mustard | mitochondrion | 10.99 | 23.77 |
TraesCS3B01G060500.1 | Wheat | cytosol | 27.23 | 23.57 |
TraesCS3A01G051800.1 | Wheat | nucleus | 28.8 | 23.44 |
Bra022508.1-P | Field mustard | nucleus | 11.52 | 23.4 |
GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 28.45 | 23.19 |
Bra008633.1-P | Field mustard | plastid | 19.02 | 22.47 |
HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 28.97 | 19.62 |
Bra024295.1-P | Field mustard | nucleus | 13.96 | 18.43 |
Bra031918.1-P | Field mustard | nucleus | 15.01 | 18.14 |
Bra009393.1-P | Field mustard | nucleus | 13.96 | 16.88 |
Protein Annotations
EnsemblPlants:Bra022297.1 | EnsemblPlants:Bra022297.1-P | EnsemblPlantsGene:Bra022297 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF27 | PFAM:PF00564 |
PFscan:PS51745 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0002547362 | UniProt:M4E0K0 |
MapMan:35.2 | : | : | : | : | : |
Description
AT3G18230 (E=3e-162) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
Coordinates
chrA05:-:18552516..18554689
Molecular Weight (calculated)
62948.3 Da
IEP (calculated)
5.138
GRAVY (calculated)
-0.462
Length
573 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDGSPRAVA LDTELLASVP DIKLRLMCSF GGHIMPRPHD MALTYSSGET RLVVVDRRSS LASLRSRLST MLLNGRSFTL KYQLPNEDLD SLVTITTDED
101: LENMIEEYDR ATSSATTRAT HRIRLFLFAN KLETAATMGS LLNSAKSETW FVDALNQPGL LPRGLSDSAA VNNTLVNLDE ETDVQELETD VGGENNKRGD
201: YITNNVMSHQ EMHMSSMPDS PMLDTTGGSS SSSPSTANLP PIHVRVSEEQ FTQMSFSNVH TQRPLEDGIG LMENQPMMVY NNAPIDNVTA VRNCQASSDD
301: DRSDPSVMVG YKKPPLPMQP LLIPLRGAGG YGLTSPDSIA SDTSISSATS VSKPLYYQEQ APAIPKVPIT QPETTLVQTS HGIPPHETTP VQTTPLILSQ
401: SGTYTTVDQQ HQLPVQQSIL HQGVQYIPHP SQCIPVYSHQ QQNYPVYVMS VPQSQQYVPS RTPPLYPNPR PEAGQNVYQA VISQNPQVHQ IQQQQLQQPL
501: QQPHHQYMSY SGGPVETMYF HAQRPPVSNA IPLVSPYQSM TPAAAAAALA DMSKQMTLNN DKEQQNMAAS QPL
101: LENMIEEYDR ATSSATTRAT HRIRLFLFAN KLETAATMGS LLNSAKSETW FVDALNQPGL LPRGLSDSAA VNNTLVNLDE ETDVQELETD VGGENNKRGD
201: YITNNVMSHQ EMHMSSMPDS PMLDTTGGSS SSSPSTANLP PIHVRVSEEQ FTQMSFSNVH TQRPLEDGIG LMENQPMMVY NNAPIDNVTA VRNCQASSDD
301: DRSDPSVMVG YKKPPLPMQP LLIPLRGAGG YGLTSPDSIA SDTSISSATS VSKPLYYQEQ APAIPKVPIT QPETTLVQTS HGIPPHETTP VQTTPLILSQ
401: SGTYTTVDQQ HQLPVQQSIL HQGVQYIPHP SQCIPVYSHQ QQNYPVYVMS VPQSQQYVPS RTPPLYPNPR PEAGQNVYQA VISQNPQVHQ IQQQQLQQPL
501: QQPHHQYMSY SGGPVETMYF HAQRPPVSNA IPLVSPYQSM TPAAAAAALA DMSKQMTLNN DKEQQNMAAS QPL
001: METPLPPLSQ LTPNPTPAAA VSSAIPAPVK SVAVQQPIDG SPRAVATDTG GIPEPLAAVP GAKLRLMCSF GGHIMPRPHD KSLTYSGGET RIVVVDRRAS
101: LSSLRSRLSS MLLNGRSFTL KYQLPSEDLD SLVTITTDED LENMIEEYDR AASSATATAT QRLRLFLFAN KLETAATMGS LLDGTKSDTW FVDALNQSGL
201: LPRGLSDSAA VNNTLVNLDE ASGGETEIQN LETNVGGENN KRGDLVANGV ISHQEMHMSS MPDSPMMEAA GSSIGSSSSS PSTSNLPPIR VRVSEDQRIE
301: EQLAQMTFSN MQTQRQFDDG VSLMANRPMM IPPGAMNDAA MAYNNAPGDG TAPASNGHVS PEDDRSELGV STGYRKPPLP MQPVTIPPRT VGGYGLTSPD
401: SVASDTSISS ATSFSKPMYY QDQPPALPRA PPVAQPETTS AQSSQVLPQT ENTSAQTTSH VLSQPGTYTT MDQQQQQPLA QQPFLHQGVQ YIPHPSQYIP
501: IYSHQQQNYP VYVMSVPQSQ QYIPAGTPPL YPNSKPGTNS RPEAAQNVYR AAPPQVIQLQ QQHQYMGYAG APQHSTNANA NYGTGAPQHS TNANANYGGP
601: FEYTNSPNET VYYHTQAPAA NTAIPLASPY QSMTPAAAAA ALADMSKQMA LDGGKQQQHM AASQPL
101: LSSLRSRLSS MLLNGRSFTL KYQLPSEDLD SLVTITTDED LENMIEEYDR AASSATATAT QRLRLFLFAN KLETAATMGS LLDGTKSDTW FVDALNQSGL
201: LPRGLSDSAA VNNTLVNLDE ASGGETEIQN LETNVGGENN KRGDLVANGV ISHQEMHMSS MPDSPMMEAA GSSIGSSSSS PSTSNLPPIR VRVSEDQRIE
301: EQLAQMTFSN MQTQRQFDDG VSLMANRPMM IPPGAMNDAA MAYNNAPGDG TAPASNGHVS PEDDRSELGV STGYRKPPLP MQPVTIPPRT VGGYGLTSPD
401: SVASDTSISS ATSFSKPMYY QDQPPALPRA PPVAQPETTS AQSSQVLPQT ENTSAQTTSH VLSQPGTYTT MDQQQQQPLA QQPFLHQGVQ YIPHPSQYIP
501: IYSHQQQNYP VYVMSVPQSQ QYIPAGTPPL YPNSKPGTNS RPEAAQNVYR AAPPQVIQLQ QQHQYMGYAG APQHSTNANA NYGTGAPQHS TNANANYGGP
601: FEYTNSPNET VYYHTQAPAA NTAIPLASPY QSMTPAAAAA ALADMSKQMA LDGGKQQQHM AASQPL
Arabidopsis Description
At3g18230 [Source:UniProtKB/TrEMBL;Acc:Q9LJQ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.