Factsheet for Bra010988.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plasma membrane

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36115	Canola	cytosol, nucleus, vacuole	94.23	94.59
CDY24410	Canola	cytosol	90.38	91.09
AT1G25300.1	Thale cress	cytosol, nucleus, plasma membrane	65.38	62.5
Zm00001d003965_P001	Maize	mitochondrion	18.46	43.64
HORVU3Hr1G008310.1	Barley	cytosol	16.92	30.77
Bra032936.1-P	Field mustard	plastid	20.0	29.05
Bra016197.1-P	Field mustard	mitochondrion	18.08	28.31
Bra025209.1-P	Field mustard	mitochondrion	19.62	28.18
Bra038608.1-P	Field mustard	nucleus	19.23	25.77
Bra018071.1-P	Field mustard	plastid	18.08	25.68
Bra035855.1-P	Field mustard	cytosol	16.15	21.99
GSMUA_Achr10P...	Banana	nucleus	28.46	21.89
GSMUA_AchrUn_...	Banana	nucleus	31.92	21.5
Bra000599.1-P	Field mustard	mitochondrion	19.62	19.25
Bra022508.1-P	Field mustard	nucleus	20.0	18.44
Bra006344.1-P	Field mustard	plastid	23.85	17.46
GSMUA_Achr8P18320_001	Banana	nucleus	34.23	17.18
Bra022297.1-P	Field mustard	nucleus	36.15	16.4
Bra022296.1-P	Field mustard	cytosol	36.92	16.22
Bra029559.1-P	Field mustard	nucleus	24.62	16.2
GSMUA_Achr2P07240_001	Banana	nucleus	34.23	16.18
Bra008633.1-P	Field mustard	plastid	29.23	15.67
Bra017462.1-P	Field mustard	cytosol, plastid	37.69	15.26
Bra037596.1-P	Field mustard	nucleus	37.69	15.24
Bra018513.1-P	Field mustard	nucleus	25.38	14.86
Bra031918.1-P	Field mustard	nucleus	26.92	14.77
Zm00001d039916_P010	Maize	nucleus	37.31	14.72
GSMUA_Achr1P21240_001	Banana	nucleus	33.85	14.67
EES00348	Sorghum	nucleus	37.31	14.63
Zm00001d008591_P001	Maize	mitochondrion	37.31	14.59
Bra024295.1-P	Field mustard	nucleus	24.23	14.52
Bra009393.1-P	Field mustard	nucleus	26.15	14.35
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	38.46	14.29
Bra024899.1-P	Field mustard	nucleus, plastid	39.62	14.19
Os01t0139200-01	Rice	nucleus	36.54	14.16
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	37.31	13.8
TraesCS3D01G050900.1	Wheat	nucleus	34.23	13.42
TraesCS3A01G051800.1	Wheat	nucleus	35.38	13.07
TraesCS3B01G060500.1	Wheat	cytosol	33.08	12.99
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	35.77	10.99

Protein Annotations

EnsemblPlants:Bra010988.1	EnsemblPlants:Bra010988.1-P	EnsemblPlantsGene:Bra010988	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002545E3D	UniProt:M4D3D4	MapMan:35.2

Description

AT1G25300 (E=4e-070) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA08:+:17431665..17432447

Molecular Weight (calculated)

29081.8 Da

IEP (calculated)

5.951

GRAVY (calculated)

-0.308

Length

260 amino acids

Sequence
(BLAST)

001: MEPKAPPLTP KLRLLCSYGG RIMPIPPSNS LEYIGGETRI VAVPRDISFS AFFQLLSGKL LHGRSFSLKY RLPSCDLDSL ITVNDNEDLQ NMIAEYDSAS
101: PQRIRLFLFP SNYPESASTR HPLSVNLLGL EPPIQKIIYT SSSSVVPFPI FPQNNCTAKQ RVDHVKFHAT SDEDPITSAS LNTGVSDKET EREEIQDQPR
201: RIVIQEPLQQ QHQFLPIFYL PVLPMPPHMV TRSVNGYALS PAMEYSTGAD PVLENKETAT

Best Arabidopsis Sequence Match ( AT1G25300.1 )
(BLAST)

001: MEPQPSLNPK LHLLCSYGGR IMPLPPEKSL HYIGGETRLV IVPRGISFLD FFKLLSDKLL SGRSFSLKYK LPSCDFDSLI TVSDNEDLQN MIAEYDSTRL
101: RRIRLFLFPL NHVELTRQSV TVNRLLGLES PIFTSLSSVL SSPIFAPNNG PVQFVHHNKV NATTAEENRR QDEAASTTSS SMLPQENTSA ANDVGGFLDR
201: ETEIVEIQDQ PRPILQEPLP QQQQQPLIIC YLPVWQMRPH MVTYPVAAYA LTPATEHSPR LDPVPENQEN AT

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q9FRH9]
SUBAcon: [cytosol,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.