Factsheet for Bra006344.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78676	Canola	plastid	94.08	74.39
CDX70680	Canola	plastid	95.21	73.32
Bra008633.1-P	Field mustard	plastid	71.83	52.58
AT5G16220.1	Thale cress	plastid	67.89	50.63
HORVU3Hr1G008310.1	Barley	cytosol	14.08	34.97
Zm00001d003965_P001	Maize	mitochondrion	10.42	33.64
Bra025209.1-P	Field mustard	mitochondrion	13.24	25.97
Bra032936.1-P	Field mustard	plastid	12.96	25.7
Bra018071.1-P	Field mustard	plastid	12.39	24.04
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	17.46	23.85
Bra038608.1-P	Field mustard	nucleus	12.96	23.71
GSMUA_AchrUn_...	Banana	nucleus	24.79	22.8
Bra035855.1-P	Field mustard	cytosol	12.11	22.51
Bra016197.1-P	Field mustard	mitochondrion	10.42	22.29
GSMUA_Achr10P...	Banana	nucleus	20.56	21.6
VIT_14s0006g02490.t01	Wine grape	nucleus	31.55	21.58
Bra029559.1-P	Field mustard	nucleus	22.54	20.25
PGSC0003DMT400067817	Potato	cytosol	29.58	18.85
Solyc02g086360.2.1	Tomato	cytosol	29.58	18.85
Bra018513.1-P	Field mustard	nucleus	23.1	18.47
Bra022508.1-P	Field mustard	nucleus	14.37	18.09
Bra000599.1-P	Field mustard	mitochondrion	13.24	17.74
GSMUA_Achr2P07240_001	Banana	nucleus	26.76	17.27
Bra022296.1-P	Field mustard	cytosol	26.76	16.05
GSMUA_Achr8P18320_001	Banana	nucleus	23.1	15.83
Os01t0139200-01	Rice	nucleus	29.86	15.8
Bra017462.1-P	Field mustard	cytosol, plastid	28.45	15.73
Bra022297.1-P	Field mustard	nucleus	25.35	15.71
GSMUA_Achr1P21240_001	Banana	nucleus	26.48	15.67
Bra031918.1-P	Field mustard	nucleus	20.85	15.61
Bra037596.1-P	Field mustard	nucleus	28.17	15.55
Zm00001d039916_P010	Maize	nucleus	28.73	15.48
EES00348	Sorghum	nucleus	28.45	15.23
Bra024295.1-P	Field mustard	nucleus	18.59	15.21
Zm00001d008591_P001	Maize	mitochondrion	28.45	15.19
Bra024899.1-P	Field mustard	nucleus, plastid	30.42	14.88
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	29.3	14.86
TraesCS3A01G051800.1	Wheat	nucleus	29.3	14.77
TraesCS3D01G050900.1	Wheat	nucleus	26.76	14.33
TraesCS3B01G060500.1	Wheat	cytosol	26.48	14.2
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	27.04	13.66
Bra009393.1-P	Field mustard	nucleus	17.75	13.29
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	29.58	12.41

Protein Annotations

EnsemblPlants:Bra006344.1	EnsemblPlants:Bra006344.1-P	EnsemblPlantsGene:Bra006344	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF14	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000253F5F3	UniProt:M4CQ55	MapMan:35.2	:

Description

AT5G16220 (E=1e-072) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA03:-:3110758..3112837

Molecular Weight (calculated)

38325.2 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.381

Length

355 amino acids

Sequence
(BLAST)

001: MTTVYSASAT VTEGTKVSPR RSNNNGRNGK LRVICRYGGN IVSQRYVGGD TRIVALPPAA ETSFASLVSH LAATLGVSYD FKVKYQLPDQ ELDSLISIAT
101: DEDVQIMMEE HGYLTCEPSS APKTRIRLFL FPSKTSEGGG ASQGGLARCK AVADTDWLGR EESKPVLTHP KTETWFVDAL KSAEMMLTGR DLSGDVNGQE
201: SMTQETSSNL GSTSSSASSS NLPPVKRSGE GISQVKYSPV ESVTSSPLAT ELSSHIYPPP PKPVLNTHQV DFPMVRTSSP LAPELYPPPK PVDSSVQTSS
301: EAVLRDDHIY NIDHLDDDTV CAQIYKTQPP APIIPSQLQT MMLTEALGKL RIHNG

Best Arabidopsis Sequence Match ( AT5G16220.1 )
(BLAST)

001: MTTVSSAFAT VAEGAKVVTP RWKKNERNGK LRVMCRYGGS IVSPPQTKSP RYVGGDTRIV AIPSSAETSF ASLVSHLTVT LKISYPFKVK YQLPDQELDS
101: LISVEADEDV QIMMEEHGYL SSESSIPQSR IRLFLFPLKS QQSNEAGASQ GDSDQCKVET DIDWLGIEES NKPIREELTQ PVLQHPKTEM WFVDALKSVE
201: MMQTRRTNSG TSGSGDGNGG ICGQESMMLE TNSSFGSTSS SVSSSNLPPI KSSGEDNIAN SQVKFAPIES VTSNDNSAVT PIPSHELPSH SHAFENKPSS
301: NLYVAELNRP VPVPISGYPP FMNQAQQQHI QVIYTGQPYI TGNSPMTLPA TAYHHTNHVY YQRPPQPYPI YYIPVEQYSS RHVQALPVKP STVLNYHQVD
401: SPVVRTSSPL APEFSSQVYP LSKPVDSSVQ TSSEATLNTT SRDAFIYNTD VDDDNDIAHA QIYKSQPPAP TLPSQY

Arabidopsis Description

Octicosapeptide/Phox/Bem1p family protein [Source:UniProtKB/TrEMBL;Acc:Q9LF06]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.