Factsheet for Bra037596.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66514	Canola	nucleus	100.0	99.84
CDY68695	Canola	nucleus	84.29	98.55
Bra022297.1-P	Field mustard	nucleus	69.36	77.84
Bra022296.1-P	Field mustard	cytosol	71.07	77.2
AT3G18230.1	Thale cress	nucleus, plastid	77.14	74.47
Zm00001d003965_P001	Maize	mitochondrion	8.86	51.82
HORVU3Hr1G008310.1	Barley	cytosol	10.42	46.85
KRH48572	Soybean	cytosol	39.19	39.31
KRH39133	Soybean	cytosol	40.9	39.31
VIT_17s0000g03180.t01	Wine grape	nucleus	37.64	37.93
GSMUA_AchrUn_...	Banana	nucleus	22.71	37.82
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	15.24	37.69
PGSC0003DMT400014442	Potato	nucleus	38.57	36.2
Solyc03g118870.2.1	Tomato	nucleus	35.61	35.95
GSMUA_Achr10P...	Banana	nucleus	18.51	35.21
Bra024899.1-P	Field mustard	nucleus, plastid	37.48	33.2
Bra025209.1-P	Field mustard	mitochondrion	9.33	33.15
Bra017462.1-P	Field mustard	cytosol, plastid	32.66	32.71
GSMUA_Achr8P18320_001	Banana	nucleus	26.28	32.63
Bra032936.1-P	Field mustard	plastid	8.71	31.28
Bra016197.1-P	Field mustard	mitochondrion	7.78	30.12
GSMUA_Achr2P07240_001	Banana	nucleus	25.66	30.0
GSMUA_Achr1P21240_001	Banana	nucleus	27.06	29.0
Zm00001d039916_P010	Maize	nucleus	29.08	28.38
Bra006344.1-P	Field mustard	plastid	15.55	28.17
Bra029559.1-P	Field mustard	nucleus	17.26	28.1
EES00348	Sorghum	nucleus	28.77	27.9
Os01t0139200-01	Rice	nucleus	28.93	27.72
Zm00001d008591_P001	Maize	mitochondrion	28.46	27.52
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	29.86	27.43
Bra018071.1-P	Field mustard	plastid	7.62	26.78
TraesCS3D01G050900.1	Wheat	nucleus	27.53	26.7
Bra038608.1-P	Field mustard	nucleus	7.93	26.29
TraesCS3A01G051800.1	Wheat	nucleus	28.62	26.14
TraesCS3B01G060500.1	Wheat	cytosol	26.75	25.98
Bra018513.1-P	Field mustard	nucleus	17.42	25.23
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	27.37	25.04
Bra008633.1-P	Field mustard	plastid	17.88	23.71
Bra035855.1-P	Field mustard	cytosol	7.0	23.56
Bra022508.1-P	Field mustard	nucleus	10.26	23.4
Bra000599.1-P	Field mustard	mitochondrion	9.64	23.4
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	28.93	21.99
Bra031918.1-P	Field mustard	nucleus	14.46	19.62
Bra024295.1-P	Field mustard	nucleus	12.91	19.12
Bra009393.1-P	Field mustard	nucleus	12.91	17.51

Protein Annotations

EnsemblPlants:Bra037596.1	EnsemblPlants:Bra037596.1-P	EnsemblPlantsGene:Bra037596	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002545055	UniProt:M4F933	MapMan:35.2

Description

AT3G18230 (E=5e-215) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA01:-:22178884..22181309

Molecular Weight (calculated)

69382.2 Da

IEP (calculated)

5.617

GRAVY (calculated)

-0.526

Length

643 amino acids

Sequence
(BLAST)

001: METPLPPMSH LASNLTSTTV VSTTIDGSPR AVAIDTGGNM EPLAAVPDAK LRLMCSFGGH IMPRPHDKAL TYSSGETRLV VIDRRASLAS LRSRLSSMLL
101: NGRSFTLKYQ LPSEDLDSLV TITTDEDLEN MIEEYDRATS SATAAATQRI RLFLFANKLE TAATMGSLLD SAKSETWFVN ALNQSGLLPR GLSDSAAVNN
201: NLVNLDEVGE GEAEVQKIGA DEGCVNNKQG GYVTNGVISH QEMHMSSMPD SPMMEPAGGS SIGSSSSSPS TANLPPIRVR VSEDQRMEQQ FAQMSFTNVD
301: GQRNMEDGAG LVANRPMMTD SAMVHNNNTP IDGATVAAAA MSNGQVSPHD DRSDPGMMAG YRKPPLPMQP VAIPQRGAGG YGLTSPDSVA SDTSISSATS
401: FSKPVYYQDQ APTMLRAPVT QPEITPVQTS HGIPQHEPTS AQTTSHVLSQ PSTYTTLDQQ HQPPVQQPFL HQGVQYIPHP SQYIPVYPHQ QQNYPVYVMS
501: VPQSQQYVPA GTPPLYPNSA PATNPRPEVA QNVYRSPISQ NPQVQQQQQQ TQHHYMGYAG GSQHNTNANP NYSTGAYEYT HPPNETMYYH AQRLPTNNAI
601: PLASPYQSMT PAAAAAALAD MSKQMSLASD KEQQQHMASS QPL

Best Arabidopsis Sequence Match ( AT3G18230.1 )
(BLAST)

001: METPLPPLSQ LTPNPTPAAA VSSAIPAPVK SVAVQQPIDG SPRAVATDTG GIPEPLAAVP GAKLRLMCSF GGHIMPRPHD KSLTYSGGET RIVVVDRRAS
101: LSSLRSRLSS MLLNGRSFTL KYQLPSEDLD SLVTITTDED LENMIEEYDR AASSATATAT QRLRLFLFAN KLETAATMGS LLDGTKSDTW FVDALNQSGL
201: LPRGLSDSAA VNNTLVNLDE ASGGETEIQN LETNVGGENN KRGDLVANGV ISHQEMHMSS MPDSPMMEAA GSSIGSSSSS PSTSNLPPIR VRVSEDQRIE
301: EQLAQMTFSN MQTQRQFDDG VSLMANRPMM IPPGAMNDAA MAYNNAPGDG TAPASNGHVS PEDDRSELGV STGYRKPPLP MQPVTIPPRT VGGYGLTSPD
401: SVASDTSISS ATSFSKPMYY QDQPPALPRA PPVAQPETTS AQSSQVLPQT ENTSAQTTSH VLSQPGTYTT MDQQQQQPLA QQPFLHQGVQ YIPHPSQYIP
501: IYSHQQQNYP VYVMSVPQSQ QYIPAGTPPL YPNSKPGTNS RPEAAQNVYR AAPPQVIQLQ QQHQYMGYAG APQHSTNANA NYGTGAPQHS TNANANYGGP
601: FEYTNSPNET VYYHTQAPAA NTAIPLASPY QSMTPAAAAA ALADMSKQMA LDGGKQQQHM AASQPL

Arabidopsis Description

At3g18230 [Source:UniProtKB/TrEMBL;Acc:Q9LJQ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.