Factsheet for Bra022508.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16375	Canola	nucleus	98.94	98.94
Bra000599.1-P	Field mustard	mitochondrion	75.53	80.38
AT5G49920.1	Thale cress	nucleus	75.18	73.61
KRH06059	Soybean	nucleus	40.07	42.16
KRH26304	Soybean	nucleus	39.01	42.15
Bra032936.1-P	Field mustard	plastid	23.05	36.31
Bra016197.1-P	Field mustard	mitochondrion	21.28	36.14
Bra025209.1-P	Field mustard	mitochondrion	22.34	34.81
PGSC0003DMT400097584	Potato	nucleus	45.39	34.78
Bra018071.1-P	Field mustard	plastid	21.28	32.79
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	42.91	31.27
Bra038608.1-P	Field mustard	nucleus	20.92	30.41
Bra035855.1-P	Field mustard	cytosol	19.86	29.32
GSMUA_Achr11P...	Banana	plastid	29.08	26.71
GSMUA_Achr3P21900_001	Banana	nucleus	34.04	26.09
TraesCS1D01G267100.1	Wheat	nucleus	30.14	23.22
TraesCS1A01G266900.1	Wheat	nucleus	29.79	23.01
Os05t0427100-01	Rice	cytosol	29.79	22.95
OQU78054	Sorghum	cytosol	29.79	22.95
Zm00001d010214_P003	Maize	cytosol	30.5	21.94
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	29.79	20.69
Bra010988.1-P	Field mustard	cytosol, nucleus, plasma membrane	18.44	20.0
HORVU1Hr1G065470.6	Barley	mitochondrion	29.79	19.35
Bra024295.1-P	Field mustard	nucleus	25.18	16.36
Bra029559.1-P	Field mustard	nucleus	22.7	16.2
Bra018513.1-P	Field mustard	nucleus	25.18	15.99
Bra031918.1-P	Field mustard	nucleus	25.89	15.4
Bra009393.1-P	Field mustard	nucleus	24.47	14.56
Bra006344.1-P	Field mustard	plastid	18.09	14.37
Bra008633.1-P	Field mustard	plastid	19.86	11.55
Bra022297.1-P	Field mustard	nucleus	23.4	11.52
Bra022296.1-P	Field mustard	cytosol	23.76	11.32
Bra037596.1-P	Field mustard	nucleus	23.4	10.26
Bra017462.1-P	Field mustard	cytosol, plastid	23.05	10.12
Bra024899.1-P	Field mustard	nucleus, plastid	24.82	9.64

Protein Annotations

EnsemblPlants:Bra022508.1	EnsemblPlants:Bra022508.1-P	EnsemblPlantsGene:Bra022508	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF13	PFAM:PF00564
SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0002545768	UniProt:M4E160	MapMan:35.2

Description

AT5G49920 (E=4e-099) | octicosapeptide/Phox/Bem1p (PB1) domain-containing protein

Coordinates

chrA02:+:9361268..9362402

Molecular Weight (calculated)

31501.6 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.584

Length

282 amino acids

Sequence
(BLAST)

001: MSMGERSPRN KVKFMSSFGG KILPRPSDGL LKYVGGETRV IAVSPDITFA ELMKKLIEIT ENDVVLKYQI IPEDLDALVS VKSDEDLKHM MDEYNRHEAP
101: KLRTFLFPAN PLVLENQLGP IEPQTIEQRY IEAVNGILRK SVSLRAPIRT RPSFTLSASA SSSPRSESSP DGYNHELPET GSSYQLSRLY PMHKVQSSPN
201: ITQPHSYHHH SAYLQPPNYL TCRLRPPPSP PLVLQRGWDP PSNAHSSGGG TGNGKLGCNE ERRFWGRTGS VPQSPLNHVL RL

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.