Factsheet for Zm00001d010214_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78054	Sorghum	cytosol	85.46	91.53
Os05t0427100-01	Rice	cytosol	56.12	60.11
TraesCS1D01G267100.1	Wheat	nucleus	55.61	59.56
TraesCS1A01G266900.1	Wheat	nucleus	54.59	58.63
TraesCS1B01G277800.1	Wheat	cytosol, mitochondrion	55.87	53.94
HORVU1Hr1G065470.6	Barley	mitochondrion	58.67	53.0
Zm00001d003965_P001	Maize	mitochondrion	10.46	37.27
Zm00001d033571_P001	Maize	cytosol	13.78	33.33
CDY21444	Canola	mitochondrion	21.17	31.44
KRH26304	Soybean	nucleus	20.92	31.42
Bra000599.1-P	Field mustard	mitochondrion	21.17	31.32
CDX83177	Canola	mitochondrion	21.17	31.2
KRH06059	Soybean	nucleus	21.17	30.97
GSMUA_Achr11P...	Banana	plastid	24.23	30.94
CDY16375	Canola	nucleus	21.94	30.5
Bra022508.1-P	Field mustard	nucleus	21.94	30.5
CDX91540	Canola	nucleus	21.68	30.14
AT5G49920.1	Thale cress	nucleus	21.94	29.86
GSMUA_Achr3P21900_001	Banana	nucleus	27.55	29.35
PGSC0003DMT400097584	Potato	nucleus	25.51	27.17
Zm00001d033564_P001	Maize	cytosol, plastid	15.31	25.0
Zm00001d049157_P001	Maize	plastid	14.54	25.0
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	23.98	24.29
Zm00001d006574_P001	Maize	plastid	15.56	16.27
Zm00001d021746_P001	Maize	plastid	15.82	16.19
Zm00001d051939_P001	Maize	cytosol	17.35	12.64
Zm00001d018447_P001	Maize	extracellular	16.33	11.68
Zm00001d039916_P010	Maize	nucleus	18.62	11.08
Zm00001d008591_P001	Maize	mitochondrion	18.37	10.83

Protein Annotations

EnsemblPlants:Zm00001d010214_P003	EnsemblPlants:Zm00001d010214_T003	EnsemblPlantsGene:Zm00001d010214	EntrezGene:100284710	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF8	PFAM:PF00564
ProteinID:AQK93643.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000220954C	UniProt:K7VV70
MapMan:35.2	:	:	:	:	:

Description

PB1 domain containing protein

Coordinates

chr8:-:104421564..104423810

Molecular Weight (calculated)

41971.2 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.291

Length

392 amino acids

Sequence
(BLAST)

001: MAEIEDAMGA PPMVTTTESE GTTTDEDVHL SPTCICGGAG GAGGGGRIKI LCSFGGRIVP RPHDGVLKYV GGETRVLAVP RSICFRGGCC SLSPCAVPRC
101: VTCRRLALSR PRCLSLPCAE LKKKVEDMFK TEVAAIKYQL LSLAEELDVL VSVTCDEDLV HMLDEYDRLE AKRSPTTSPR FRVYVFTPQA TAPHPSAAAP
201: TVPSSTRYAG LSRLHPHHHH HQQHRQFQPE RYVATVPASP DGSPPFSAQP HGAVSAGNSP RANALGVGFG MQRVRSSPNL STLDAAARRL HQHGVDGSIS
301: GYVSGSPRHA GAGPMLLQNN FHHYQHQYPT APVPVPVPVP VPHHGGRYDA RGYVRVGNYL APMVPAARPL SRGGPAPHSD MVTPKKSAIV WD

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.