Factsheet for TraesCS1B01G277800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G267100.1	Wheat	nucleus	87.68	97.27
TraesCS1A01G266900.1	Wheat	nucleus	87.19	96.99
HORVU1Hr1G065470.6	Barley	mitochondrion	85.71	80.18
Os05t0427100-01	Rice	cytosol	59.85	66.39
OQU78054	Sorghum	cytosol	54.68	60.66
Zm00001d010214_P003	Maize	cytosol	53.94	55.87
KRH06059	Soybean	nucleus	21.43	32.46
CDY21444	Canola	mitochondrion	20.94	32.2
KRH26304	Soybean	nucleus	20.69	32.18
Bra000599.1-P	Field mustard	mitochondrion	20.94	32.08
CDX83177	Canola	mitochondrion	20.94	31.95
GSMUA_Achr11P...	Banana	plastid	23.15	30.62
Bra022508.1-P	Field mustard	nucleus	20.69	29.79
CDX91540	Canola	nucleus	20.69	29.79
CDY16375	Canola	nucleus	20.69	29.79
AT5G49920.1	Thale cress	nucleus	20.94	29.51
GSMUA_Achr3P21900_001	Banana	nucleus	26.35	29.08
VIT_12s0035g01050.t01	Wine grape	extracellular, golgi	25.12	26.36
TraesCS6B01G245800.1	Wheat	plastid	12.81	26.26
PGSC0003DMT400097584	Potato	nucleus	23.15	25.54
TraesCS4B01G031400.1	Wheat	plastid	14.29	22.92
TraesCS2B01G234400.1	Wheat	plastid	14.78	15.83
TraesCS6B01G419500.1	Wheat	cytosol	17.24	14.2
TraesCS3B01G060500.1	Wheat	cytosol	16.26	9.97

Protein Annotations

EnsemblPlants:TraesCS1B01G277800.1	EnsemblPlantsGene:TraesCS1B01G277800	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF8	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	TIGR:cd06410	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr1B:+:486345401..486346818

Molecular Weight (calculated)

43590.2 Da

IEP (calculated)

9.104

GRAVY (calculated)

-0.503

Length

406 amino acids

Sequence
(BLAST)

001: MCSYTADRWQ NGKVATGPFS TQHIRLPSIE QEYIRSRLVP DMEHAMPTMA AESEGATTDD DVHLSPTSVS SGGGGGGGGP PSVRFKILCS FGGRIMPRPS
101: DGALKYIGGD TRVLAVPRSI RFRDLKKKVE EMFKTDVAAI KYQLLSSDDL DVLVSVTCDE DLAHMLDEYD RFEAKRSPSA SPRFRVYVFV PHQVSASSVA
201: AAVPAPVSSS RHVSYARNQP HYHHHHHLLQ PERERYVTSV PGTPDGSPPY PDQPNGVASA GNSPRANIVE QAVFRGGMQR VRSSPNLGGL NAAPLPFHDH
301: AGDSPGGLAG YMSGSPVHPG AGHMFSQASY NPYRSPQPQY SPAPVPVPHH AGVAGRYDTR GGYARGGSYM AAPLAPALRS GRPVTRSGGA PYSEMQTPKK
401: AATIWD

Best Arabidopsis Sequence Match ( AT5G49920.1 )
(BLAST)

001: MAEERSPSKV KFMCSFGGRI LPRPSDSVLK YVGGETRVVA VSPDISFSEL MKKLTAITEN DIVLKYQIIP EDLDALVSVK SDEDVKHMIE EYNRHETPKL
101: RTFLFPANPV VLESQLGPIE PQTIEQRYIE AINGILRTSK SATALRAPIK TRPSFTVSTC SSPKSESPDG YSHEPPETSF QNNYQLSRLY PMHRVHSSPN
201: ISHQLQPHSH YHNHNHNAYV QPPTNYLTCR PRLPTPLEIP RGIGWDQSYT TTHNSGGGNG KYGCNDDRRF WGRASSVPQS PRNHGLRL

Arabidopsis Description

At5g49920 [Source:UniProtKB/TrEMBL;Acc:Q9LTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.