CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037596.1-P	Field mustard	nucleus	98.55	84.29
CDY66514	Canola	nucleus	98.55	84.16
CDY40994	Canola	cytosol	71.45	68.95
CDY24442	Canola	cytosol	71.27	68.65
CDX92217	Canola	cytosol	72.0	67.58
AT3G18230.1	Thale cress	nucleus, plastid	77.09	63.66
Zm00001d003965_P001	Maize	mitochondrion	10.18	50.91
HORVU3Hr1G008310.1	Barley	cytosol	12.18	46.85
GSMUA_AchrUn_...	Banana	nucleus	26.73	38.08
CDY24410	Canola	cytosol	16.73	35.66
CDY36115	Canola	cytosol, nucleus, vacuole	16.73	35.52
GSMUA_Achr10P...	Banana	nucleus	21.82	35.5
Solyc03g118870.2.1	Tomato	nucleus	40.36	34.85
KRH48572	Soybean	cytosol	40.36	34.63
VIT_17s0000g03180.t01	Wine grape	nucleus	39.82	34.33
KRH39133	Soybean	cytosol	41.45	34.08
PGSC0003DMT400014442	Potato	nucleus	40.91	32.85
CDY13638	Canola	mitochondrion	10.55	32.04
CDX83621	Canola	mitochondrion	10.55	32.04
CDY61217	Canola	cytosol, mitochondrion	9.27	30.72
CDY66304	Canola	cytosol	9.09	30.12
CDY28543	Canola	plastid	9.64	30.11
CDY25942	Canola	nucleus, plastid	34.18	29.94
CDY48987	Canola	plastid	9.64	29.61
CDY41073	Canola	nucleus, plastid	33.82	29.48
GSMUA_Achr8P18320_001	Banana	nucleus	27.64	29.34
CDY17690	Canola	nucleus, plastid	38.55	29.28
GSMUA_Achr2P07240_001	Banana	nucleus	27.82	27.82
CDY31319	Canola	nucleus	14.0	27.6
CDY39571	Canola	plastid	8.91	26.78
GSMUA_Achr1P21240_001	Banana	nucleus	29.09	26.67
CDY41501	Canola	cytosol	9.09	26.45
Zm00001d039916_P010	Maize	nucleus	31.45	26.25
CDY48161	Canola	plastid	8.73	26.23
CDX84387	Canola	nucleus	9.27	26.02
EES00348	Sorghum	nucleus	31.27	25.94
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	32.91	25.86
TraesCS3D01G050900.1	Wheat	nucleus	31.09	25.79
CDY20093	Canola	extracellular, plasma membrane	9.09	25.77
Os01t0139200-01	Rice	nucleus	31.27	25.63
Zm00001d008591_P001	Maize	mitochondrion	30.91	25.56
CDY46377	Canola	nucleus	18.18	25.25
CDY62874	Canola	nucleus	18.18	25.19
CDY48129	Canola	cytosol, nucleus, plastid	8.73	25.13
CDY72321	Canola	plastid	8.0	24.58
TraesCS3A01G051800.1	Wheat	nucleus	31.09	24.29
TraesCS3B01G060500.1	Wheat	cytosol	28.91	24.02
CDX83177	Canola	mitochondrion	11.27	23.31
CDX91230	Canola	nucleus	18.73	23.3
CDY21444	Canola	mitochondrion	11.09	23.11
CDY16375	Canola	nucleus	11.82	23.05
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	29.45	23.04
CDX97304	Canola	nucleus	18.55	22.97
CDX70680	Canola	plastid	19.09	22.78
CDX78676	Canola	plastid	18.55	22.72
CDX91540	Canola	nucleus	11.64	22.7
CDX69461	Canola	plastid	19.09	21.65
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	31.45	20.45
CDY46804	Canola	nucleus	15.27	17.65
CDY58263	Canola	nucleus	14.73	16.91
CDX84525	Canola	nucleus	14.55	16.49
CDX69896	Canola	nucleus	12.73	14.89
CDY21590	Canola	nucleus	12.55	14.53

Protein Annotations

EnsemblPlants:CDY68695	EnsemblPlantsGene:GSBRNA2T00077076001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564	ProteinID:CDY68695
ProteinID:CDY68695.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EEE8B4	UniProt:A0A078JQH6
MapMan:35.2	:	:	:	:	:

Description

BnaC01g43910DBnaC01g43910D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JQH6]

Coordinates

chrLK037816:-:3..2151

Molecular Weight (calculated)

59315.6 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.455

Length

550 amino acids

Sequence
(BLAST)

001: METPLPPMSH LASNLTSTTV VSTTIDGSPR AVAIDTGGNM EPLAAVPDAK LRLMCSFGGH IMPRPHDKAL AYSSGETRLV VIDRRASLAS LRSRLSSMLL
101: NGRSFTLKYQ LPSEDLDSLV TITTDEDLEN MIEEYDRATS SATAAATQRI RLFLFANKLE TAATMGSLLD SAKSETWFVN ALNQSGLLPR GLSDSAAVNN
201: NLVNLDEVGE GEAEVQKVGA DEGCVNNKQR GYITNGVISH QEMHMSSMPD SPMMEPAGGS SIGSSSSSPS TANLPPIRVR VSEDQRMEQQ FAQMSFTNVD
301: GQRNMEDGAA LVANRPMMTD SAIVYNNNTP IDGATVAAAA ISNGQVSPHD DRSDPGMMAG YRKPPLPMQP VAIPQRGAGG YGLTSPDSVA SDTSISSATS
401: FSKPVYYQDQ APTMLRAPVT QPEITPVQTS HGIPQHEPTS AQTTSHVLSQ PSTYTTLDQQ HQPPVQQPFL HQGVQYIPHP SQYIPVYPHQ QQNYPVYVMS
501: VPQSQQYVPA GTPPLYPNSA PATNPRPEVA QNVYRSPISQ NPQVQQQQQQ

Best Arabidopsis Sequence Match ( AT3G18230.1 )
(BLAST)

001: METPLPPLSQ LTPNPTPAAA VSSAIPAPVK SVAVQQPIDG SPRAVATDTG GIPEPLAAVP GAKLRLMCSF GGHIMPRPHD KSLTYSGGET RIVVVDRRAS
101: LSSLRSRLSS MLLNGRSFTL KYQLPSEDLD SLVTITTDED LENMIEEYDR AASSATATAT QRLRLFLFAN KLETAATMGS LLDGTKSDTW FVDALNQSGL
201: LPRGLSDSAA VNNTLVNLDE ASGGETEIQN LETNVGGENN KRGDLVANGV ISHQEMHMSS MPDSPMMEAA GSSIGSSSSS PSTSNLPPIR VRVSEDQRIE
301: EQLAQMTFSN MQTQRQFDDG VSLMANRPMM IPPGAMNDAA MAYNNAPGDG TAPASNGHVS PEDDRSELGV STGYRKPPLP MQPVTIPPRT VGGYGLTSPD
401: SVASDTSISS ATSFSKPMYY QDQPPALPRA PPVAQPETTS AQSSQVLPQT ENTSAQTTSH VLSQPGTYTT MDQQQQQPLA QQPFLHQGVQ YIPHPSQYIP
501: IYSHQQQNYP VYVMSVPQSQ QYIPAGTPPL YPNSKPGTNS RPEAAQNVYR AAPPQVIQLQ QQHQYMGYAG APQHSTNANA NYGTGAPQHS TNANANYGGP
601: FEYTNSPNET VYYHTQAPAA NTAIPLASPY QSMTPAAAAA ALADMSKQMA LDGGKQQQHM AASQPL

Arabidopsis Description

At3g18230 [Source:UniProtKB/TrEMBL;Acc:Q9LJQ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.