CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018513.1-P	Field mustard	nucleus	100.0	100.0
CDX91230	Canola	nucleus	98.2	98.64
CDY62874	Canola	nucleus	77.25	86.4
CDY46377	Canola	nucleus	76.13	85.35
AT4G05150.1	Thale cress	nucleus	85.59	79.66
VIT_00s0203g00140.t01	Wine grape	cytosol, nucleus, plastid	34.68	53.85
KRH41951	Soybean	nucleus	46.85	49.41
KRH49930	Soybean	nucleus	46.4	48.58
Solyc02g079360.1.1	Tomato	nucleus	42.12	48.57
PGSC0003DMT400057688	Potato	nucleus	44.37	47.36
GSMUA_Achr4P33650_001	Banana	mitochondrion	26.8	38.39
CDY66304	Canola	cytosol	12.84	34.34
CDY61217	Canola	cytosol, mitochondrion	12.39	33.13
HORVU2Hr1G041600.1	Barley	mitochondrion	22.3	32.78
TraesCS2A01G207800.1	Wheat	plastid	26.8	32.08
TraesCS2D01G214600.1	Wheat	plastid	26.58	31.64
TraesCS2B01G234400.1	Wheat	plastid	26.13	30.61
EER99518	Sorghum	plastid	26.13	29.59
Zm00001d006574_P001	Maize	plastid	24.77	29.33
Zm00001d021746_P001	Maize	plastid	25.23	29.24
CDY20093	Canola	extracellular, plasma membrane	12.61	28.87
CDX83621	Canola	mitochondrion	11.71	28.73
CDY41501	Canola	cytosol	12.16	28.57
CDY28543	Canola	plastid	11.26	28.41
CDY48987	Canola	plastid	11.26	27.93
CDY13638	Canola	mitochondrion	11.26	27.62
CDX84387	Canola	nucleus	12.16	27.55
CDY48161	Canola	plastid	11.04	26.78
CDY39571	Canola	plastid	11.04	26.78
CDY31319	Canola	nucleus	16.67	26.52
Os07t0556300-01	Rice	endoplasmic reticulum, vacuole	25.23	26.48
CDY36115	Canola	cytosol, nucleus, vacuole	15.32	26.25
CDY48129	Canola	cytosol, nucleus, plastid	11.26	26.18
CDY72321	Canola	plastid	10.36	25.7
CDY21444	Canola	mitochondrion	15.09	25.38
CDY16375	Canola	nucleus	15.99	25.18
CDX91540	Canola	nucleus	15.77	24.82
CDX83177	Canola	mitochondrion	14.86	24.81
CDY24410	Canola	cytosol	14.41	24.81
CDY46804	Canola	nucleus	21.85	20.38
CDX78676	Canola	plastid	20.5	20.27
CDX70680	Canola	plastid	20.72	19.96
CDY58263	Canola	nucleus	21.4	19.83
CDY40994	Canola	cytosol	25.23	19.65
CDY24442	Canola	cytosol	25.23	19.61
CDX92217	Canola	cytosol	25.68	19.45
CDX84525	Canola	nucleus	21.17	19.38
CDY41073	Canola	nucleus, plastid	27.25	19.18
CDX69461	Canola	plastid	20.95	19.18
KXG37356	Sorghum	nucleus	14.64	18.73
CDY25942	Canola	nucleus, plastid	26.35	18.63
CDY68695	Canola	nucleus	22.97	18.55
CDY17690	Canola	nucleus, plastid	30.18	18.51
CDX69896	Canola	nucleus	19.14	18.09
CDY21590	Canola	nucleus	19.14	17.89
CDY66514	Canola	nucleus	25.23	17.39

Protein Annotations

EnsemblPlants:CDX97304	EnsemblPlantsGene:GSBRNA2T00104358001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF4	PFAM:PF00564	ProteinID:CDX97304
ProteinID:CDX97304.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI000254811D	MapMan:35.2

Description

BnaA02g20950D

Coordinates

chrLK031898:-:747165..749302

Molecular Weight (calculated)

49148.4 Da

IEP (calculated)

5.865

GRAVY (calculated)

-0.770

Length

444 amino acids

Sequence
(BLAST)

001: MASTLQPEMD NDSMASSPRS EYDNQPRVRF MCTFGGRILP RPPDNQLSYV GGDNRMIAVH RNTSFASLLN KLAKLSGKSN ISVKYQLPNE DLDALISVST
101: DEDVENMMDE YDRVAQNQNP RSSRLRLFLF TNNIAGEDDN DSRASSISSL LDSSVNREQW FLDALNLGSS AVSNGGSGKG FERVRSEVSS IVSEVPDYLF
201: GLDTFDETAP PHELRDRDPR AKIRREVSTL SDPGSPRRDV PSPYGSTSSA PVMRSSTPEL QPVQTKPDSP EPVSTPKSDP QPEQVIQQSN LPVNPQWQYA
301: PGPQVHYQQP VYYVPSSVQP GNHMVQPGNH MIQQGNHMVQ QGNHMVQPVQ MPGQYVPQYH HLPMGYHHQP QTHRIPGPGP GLGQVYGGTA RPVMMAVDGV
401: NRPAYYDMNT PGPVQMYHNH PGMVVPGMEG QYRTETDSDP GRAS

Best Arabidopsis Sequence Match ( AT4G05150.1 )
(BLAST)

001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS

Arabidopsis Description

AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.