Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46377 | Canola | nucleus | 96.73 | 96.97 |
| Bra029559.1-P | Field mustard | nucleus | 94.21 | 94.68 |
| CDX97304 | Canola | nucleus | 86.4 | 77.25 |
| CDX91230 | Canola | nucleus | 85.64 | 76.92 |
| AT4G05150.1 | Thale cress | nucleus | 85.39 | 71.07 |
| VIT_00s0203g00140.t01 | Wine grape | cytosol, nucleus, plastid | 37.78 | 52.45 |
| KRH41951 | Soybean | nucleus | 47.86 | 45.13 |
| KRH49930 | Soybean | nucleus | 47.61 | 44.58 |
| Solyc02g079360.1.1 | Tomato | nucleus | 42.82 | 44.16 |
| PGSC0003DMT400057688 | Potato | nucleus | 45.59 | 43.51 |
| GSMUA_Achr4P33650_001 | Banana | mitochondrion | 26.95 | 34.52 |
| CDY66304 | Canola | cytosol | 13.85 | 33.13 |
| CDY61217 | Canola | cytosol, mitochondrion | 13.6 | 32.53 |
| TraesCS2A01G207800.1 | Wheat | plastid | 26.95 | 28.84 |
| CDX83621 | Canola | mitochondrion | 13.1 | 28.73 |
| HORVU2Hr1G041600.1 | Barley | mitochondrion | 21.66 | 28.48 |
| TraesCS2D01G214600.1 | Wheat | plastid | 26.7 | 28.42 |
| CDY28543 | Canola | plastid | 12.59 | 28.41 |
| CDY41501 | Canola | cytosol | 13.35 | 28.04 |
| TraesCS2B01G234400.1 | Wheat | plastid | 26.7 | 27.97 |
| CDY48987 | Canola | plastid | 12.59 | 27.93 |
| CDY20093 | Canola | extracellular, plasma membrane | 13.6 | 27.84 |
| CDY13638 | Canola | mitochondrion | 12.59 | 27.62 |
| CDX84387 | Canola | nucleus | 13.6 | 27.55 |
| CDY48161 | Canola | plastid | 12.09 | 26.23 |
| CDY39571 | Canola | plastid | 12.09 | 26.23 |
| Zm00001d006574_P001 | Maize | plastid | 24.43 | 25.87 |
| EER99518 | Sorghum | plastid | 25.44 | 25.77 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 12.34 | 25.65 |
| Zm00001d021746_P001 | Maize | plastid | 24.69 | 25.59 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 16.62 | 25.48 |
| CDY31319 | Canola | nucleus | 17.88 | 25.45 |
| CDY72321 | Canola | plastid | 11.34 | 25.14 |
| Os07t0556300-01 | Rice | endoplasmic reticulum, vacuole | 25.94 | 24.35 |
| CDY24410 | Canola | cytosol | 15.62 | 24.03 |
| CDY16375 | Canola | nucleus | 16.88 | 23.76 |
| CDY21444 | Canola | mitochondrion | 15.62 | 23.48 |
| CDX91540 | Canola | nucleus | 16.62 | 23.4 |
| CDX83177 | Canola | mitochondrion | 15.62 | 23.31 |
| CDY41073 | Canola | nucleus, plastid | 30.23 | 19.02 |
| CDY40994 | Canola | cytosol | 27.2 | 18.95 |
| CDY24442 | Canola | cytosol | 27.2 | 18.91 |
| CDX92217 | Canola | cytosol | 27.71 | 18.77 |
| CDX70680 | Canola | plastid | 21.66 | 18.66 |
| CDY46804 | Canola | nucleus | 22.17 | 18.49 |
| CDY58263 | Canola | nucleus | 22.17 | 18.37 |
| CDX69461 | Canola | plastid | 22.42 | 18.35 |
| CDX78676 | Canola | plastid | 20.65 | 18.26 |
| CDY68695 | Canola | nucleus | 25.19 | 18.18 |
| CDY25942 | Canola | nucleus, plastid | 28.46 | 17.99 |
| CDX84525 | Canola | nucleus | 21.91 | 17.94 |
| CDX69896 | Canola | nucleus | 20.91 | 17.66 |
| CDY21590 | Canola | nucleus | 20.91 | 17.47 |
| CDY66514 | Canola | nucleus | 28.21 | 17.39 |
| CDY17690 | Canola | nucleus, plastid | 31.23 | 17.13 |
| KXG37356 | Sorghum | nucleus | 13.6 | 15.56 |
Protein Annotations
| EnsemblPlants:CDY62874 | EnsemblPlantsGene:GSBRNA2T00037704001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF4 | PFAM:PF00564 | ProteinID:CDY62874 |
| ProteinID:CDY62874.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EE2543 | UniProt:A0A078JDA2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng41080DBnaCnng41080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDA2]
Coordinates
chrLK034211:+:11764..13350
Molecular Weight (calculated)
44103.7 Da
IEP (calculated)
5.227
GRAVY (calculated)
-0.689
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MASVLPPEMD NDSMASSPRS EYDNQPRVRF MCTFGGRILP RPPDNQLCYV GGDNRMVAVH RHTTFTSLLT KLAKLSGKGN VSVKYQLPNE DLDALISVST
101: DEDVENMMEE YDRVALNQNP RSSRLRLFLF AKTIAGEEDD NDSRASSISS LLDSSVNREQ WSEVSSIVSE VPDYLFGLDH FDETAPPHDR DPRAKIRREV
201: STLSDPGSPR RDVPSPYGST SSAPVITSST PELPPVKINP ESPEPVLTPK ADPQPEQVIQ QSNLPVNSQW QYAAPGPQFH YQSPVYMVQP GNHMVQGNHM
301: VQPVLMQGQY LPQYQHVPMG YHHQPQPHQI PGPGLGQAYG ETGRPVMMAT DGVNRTAYYG MKTPDPVQMY YQHPGMVVPG VEEQYRTKTD TGPGQAS
101: DEDVENMMEE YDRVALNQNP RSSRLRLFLF AKTIAGEEDD NDSRASSISS LLDSSVNREQ WSEVSSIVSE VPDYLFGLDH FDETAPPHDR DPRAKIRREV
201: STLSDPGSPR RDVPSPYGST SSAPVITSST PELPPVKINP ESPEPVLTPK ADPQPEQVIQ QSNLPVNSQW QYAAPGPQFH YQSPVYMVQP GNHMVQGNHM
301: VQPVLMQGQY LPQYQHVPMG YHHQPQPHQI PGPGLGQAYG ETGRPVMMAT DGVNRTAYYG MKTPDPVQMY YQHPGMVVPG VEEQYRTKTD TGPGQAS
001: MKSNQKKQKS PNYQNPRRQR GEIEREKEAK IMASIPPPEL DNDSLASSPR SEYDSQPRVR FMCTFGGRIL PRPPDNQLCY VGGDNRMVAV HRHTTFASLL
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
101: SKLAKLSGKS NISVKYQLPN EDLDALISVS TDEDVENMMD EYDRVAQNQN PRASRLRLFL FTKNVAGEED NDSRASSISS LLDSSVNREQ WFLDALNLGS
201: SAAATAVSNG GSGRVFERVR SEVSSIVSEV PDYLFGLDNF DETAPPHELR DRDPRAKIQR EVSTLSDPGS PRRDVPSPYG STSSAPVMRI STPELPPPVF
301: IKPESPEPVS TPKSNPQPEQ VMQQSNLPVN SQWQYAPGPG QQVHYQGHTI HQSPVYYVPG SVPGNHMVQQ GNHMVQPGNH MVQPVQMPGQ YLQQYHHVPM
401: GYHQPQTHQM AGPGQVYGGT VRPVMMAVDG MNRTGYYGMK TPGPVQMYQH HTGMVVPGVE EQQQYRTETD SDTGRAS
Arabidopsis Description
AT4g05150/C17L7_70 [Source:UniProtKB/TrEMBL;Acc:Q940N7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.