CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	CDX73744	AT3G51180.1	21798944
AT5G64430.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031918.1-P	Field mustard	nucleus	96.01	96.41
CDY31319	Canola	nucleus	53.57	91.4
CDY58263	Canola	nucleus	76.05	75.57
CDX84525	Canola	nucleus	76.26	74.85
AT5G64430.1	Thale cress	nucleus	79.41	73.68
KRH57272	Soybean	cytosol	12.82	66.3
CDY21590	Canola	nucleus	59.45	59.58
CDX69896	Canola	nucleus	58.82	59.57
KRH49860	Soybean	nucleus	44.33	44.61
KRH21700	Soybean	nucleus	41.18	44.55
KRH42038	Soybean	cytosol	44.54	44.54
KRH10652	Soybean	cytosol	40.55	43.27
VIT_03s0097g00600.t01	Wine grape	nucleus	42.44	43.25
PGSC0003DMT400008036	Potato	nucleus	42.86	41.55
Solyc01g106320.2.1	Tomato	extracellular	42.86	41.38
CDX83621	Canola	mitochondrion	12.61	33.15
CDY48987	Canola	plastid	12.39	32.96
CDY28543	Canola	plastid	12.18	32.95
CDY13638	Canola	mitochondrion	11.97	31.49
CDY66304	Canola	cytosol	10.5	30.12
CDY41501	Canola	cytosol	11.76	29.63
CDY61217	Canola	cytosol, mitochondrion	10.29	29.52
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	25.63	29.47
CDY72321	Canola	plastid	10.92	29.05
CDX84387	Canola	nucleus	11.76	28.57
Zm00001d051939_P001	Maize	cytosol	31.93	28.25
CDY36115	Canola	cytosol, nucleus, vacuole	15.13	27.8
CDY48129	Canola	cytosol, nucleus, plastid	11.13	27.75
GSMUA_Achr1P05710_001	Banana	cytosol	28.15	27.52
CDY48161	Canola	plastid	10.5	27.32
EES07730	Sorghum	cytosol	32.35	27.21
CDY24410	Canola	cytosol	14.71	27.13
CDY21444	Canola	mitochondrion	14.92	26.89
TraesCS6A01G380500.1	Wheat	cytosol	30.04	26.88
Zm00001d018447_P001	Maize	extracellular	30.88	26.82
CDY39571	Canola	plastid	10.29	26.78
CDX83177	Canola	mitochondrion	14.92	26.69
TraesCS6B01G419500.1	Wheat	cytosol	27.1	26.17
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	30.04	25.95
TraesCS6D01G365200.1	Wheat	cytosol	26.47	25.77
CDY16375	Canola	nucleus	15.13	25.53
CDY20093	Canola	extracellular, plasma membrane	10.29	25.26
CDX91540	Canola	nucleus	14.92	25.18
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	15.55	24.92
CDY62874	Canola	nucleus	18.49	22.17
CDY46377	Canola	nucleus	18.28	21.97
CDX91230	Canola	nucleus	20.38	21.95
CDX97304	Canola	nucleus	20.38	21.85
CDX78676	Canola	plastid	18.07	19.15
CDX69461	Canola	plastid	19.33	18.97
CDX70680	Canola	plastid	17.86	18.44
CDY25942	Canola	nucleus, plastid	22.27	16.88
CDY41073	Canola	nucleus, plastid	22.27	16.8
CDY17690	Canola	nucleus, plastid	25.0	16.44
CDY40994	Canola	cytosol	19.33	16.14
CDY24442	Canola	cytosol	19.33	16.11
CDX92217	Canola	cytosol	18.91	15.36
CDY68695	Canola	nucleus	17.65	15.27
CDY66514	Canola	nucleus	19.96	14.75

Protein Annotations

EnsemblPlants:CDY46804	EnsemblPlantsGene:GSBRNA2T00086236001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564	ProteinID:CDY46804
ProteinID:CDY46804.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EE7A63	UniProt:A0A078IBS2
MapMan:35.2	:	:	:	:	:

Description

BnaC02g43120DBnaC02g43120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBS2]

Coordinates

chrLK032686:-:35156..36799

Molecular Weight (calculated)

52096.2 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.692

Length

476 amino acids

Sequence
(BLAST)

001: MEKLSYNSYP DSTDSSPRSR EIDFDNPPPW DDHNHQSYKV RFMCSYGGKI QPRPHDNQLT YVNGETKILS VDRGIRFPVL ASKLSAVCGG DGDVLFKYQL
101: PGEDLDALIS VTNDDDLEHM MHEYDRLLRV SSKPARMRLF LFPVSSGGFG SEGSSHSDRD RFVEALNTVR NRSEPEKTVT GPVNSADFLF GTEKVVAPPP
201: PPAAPVVLEP HPPVVQPDHA VEMQNQMLEF QRMQVRDQEQ QQEAVYRRKS EDGLIFSPPY APPPPQTAVP QNSTQAPPMT FWQGNHCNPG GVYPTTAPGM
301: GLPEQPVYMV PAPAPTPTPH PGTVYHAQPP QQLQSVMRPI APGQGNQGGF YPQAYREQHQ PAYNVAQPQV GARAPPQQQP PPPFTSGPPP PQPQYSAVPP
401: PRQVLGLPDT AAYTQVNYAG GMGKQVYYTE APPPQYHGGV GLPVNGMSEV RTGPDGKPVV MNMSPKVSSQ SSDSAV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.