Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01190.1 | CDX97722 | AT3G16120.1 | 21798944 |
| AT2G01190.1 | CDY30135 | AT3G16120.1 | 21798944 |
| AT2G01190.1 | CDY39571 | AT3G48240.1 | 21798944 |
| AT2G01190.1 | CDY48161 | AT3G48240.1 | 21798944 |
| AT2G01190.1 | CDY44770 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024899.1-P | Field mustard | nucleus, plastid | 98.07 | 97.8 |
| AT2G01190.1 | Thale cress | nucleus, plastid | 80.39 | 80.83 |
| CDY41073 | Canola | nucleus, plastid | 68.92 | 79.08 |
| CDY25942 | Canola | nucleus, plastid | 65.88 | 75.96 |
| Zm00001d003965_P001 | Maize | mitochondrion | 8.7 | 57.27 |
| VIT_01s0011g04140.t01 | Wine grape | nucleus | 50.83 | 52.8 |
| KRH35888 | Soybean | nucleus | 48.62 | 49.79 |
| HORVU3Hr1G008310.1 | Barley | cytosol | 9.67 | 48.95 |
| KRG90906 | Soybean | nucleus, plastid | 48.07 | 48.27 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.59 | 46.11 |
| Solyc05g008830.2.1 | Tomato | nucleus | 40.06 | 45.1 |
| GSMUA_Achr10P... | Banana | nucleus | 19.75 | 42.31 |
| KRH38173 | Soybean | nucleus | 37.43 | 41.56 |
| GSMUA_Achr8P18320_001 | Banana | nucleus | 28.87 | 40.35 |
| CDY40994 | Canola | cytosol | 30.8 | 39.12 |
| CDY24442 | Canola | cytosol | 30.8 | 39.05 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 13.81 | 38.61 |
| CDX92217 | Canola | cytosol | 31.22 | 38.57 |
| CDY68695 | Canola | nucleus | 29.28 | 38.55 |
| CDY24410 | Canola | cytosol | 13.67 | 38.37 |
| GSMUA_Achr2P07240_001 | Banana | nucleus | 28.87 | 38.0 |
| CDY66514 | Canola | nucleus | 32.32 | 36.34 |
| CDY13638 | Canola | mitochondrion | 8.98 | 35.91 |
| CDY28543 | Canola | plastid | 8.7 | 35.8 |
| CDX83621 | Canola | mitochondrion | 8.84 | 35.36 |
| CDY48987 | Canola | plastid | 8.7 | 35.2 |
| GSMUA_Achr1P21240_001 | Banana | nucleus | 27.76 | 33.5 |
| EES00348 | Sorghum | nucleus | 30.66 | 33.48 |
| Zm00001d039916_P010 | Maize | nucleus | 30.39 | 33.38 |
| Os01t0139200-01 | Rice | nucleus | 30.66 | 33.08 |
| CDY31319 | Canola | nucleus | 12.71 | 32.97 |
| Zm00001d008591_P001 | Maize | mitochondrion | 30.25 | 32.93 |
| GSMUA_Achr11P... | Banana | plasma membrane, vacuole | 31.77 | 32.86 |
| CDY41501 | Canola | cytosol | 8.43 | 32.28 |
| CDX84387 | Canola | nucleus | 8.7 | 32.14 |
| GSMUA_Achr6P09850_001 | Banana | endoplasmic reticulum, extracellular | 31.08 | 32.01 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 8.43 | 31.94 |
| CDY39571 | Canola | plastid | 8.01 | 31.69 |
| TraesCS3A01G051800.1 | Wheat | nucleus | 30.52 | 31.39 |
| CDY61217 | Canola | cytosol, mitochondrion | 7.18 | 31.33 |
| CDY66304 | Canola | cytosol | 7.18 | 31.33 |
| CDY62874 | Canola | nucleus | 17.13 | 31.23 |
| TraesCS3D01G050900.1 | Wheat | nucleus | 28.59 | 31.22 |
| CDY48161 | Canola | plastid | 7.87 | 31.15 |
| CDY46377 | Canola | nucleus | 16.85 | 30.81 |
| CDY72321 | Canola | plastid | 7.6 | 30.73 |
| CDX91230 | Canola | nucleus | 18.65 | 30.54 |
| TraesCS3B01G060500.1 | Wheat | cytosol | 27.76 | 30.36 |
| CDX97304 | Canola | nucleus | 18.51 | 30.18 |
| CDX70680 | Canola | plastid | 17.96 | 28.2 |
| CDX78676 | Canola | plastid | 17.13 | 27.62 |
| CDX69461 | Canola | plastid | 18.37 | 27.42 |
| CDY20093 | Canola | extracellular, plasma membrane | 7.18 | 26.8 |
| HORVU3Hr1G008420.4 | Barley | cytosol, nucleus | 30.39 | 26.0 |
| CDY58263 | Canola | nucleus | 16.57 | 25.05 |
| CDY21444 | Canola | mitochondrion | 9.12 | 25.0 |
| CDY46804 | Canola | nucleus | 16.44 | 25.0 |
| CDY16375 | Canola | nucleus | 9.53 | 24.47 |
| CDX83177 | Canola | mitochondrion | 8.98 | 24.44 |
| CDX84525 | Canola | nucleus | 16.02 | 23.92 |
| CDX91540 | Canola | nucleus | 9.25 | 23.76 |
| CDX69896 | Canola | nucleus | 14.92 | 22.98 |
| CDY21590 | Canola | nucleus | 14.78 | 22.53 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.2 | UniProt:A0A078FT27 | EnsemblPlants:CDY17690 | ProteinID:CDY17690 | ProteinID:CDY17690.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | EnsemblPlantsGene:GSBRNA2T00001910001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF00564 | PFscan:PS51745 | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF3 | SMART:SM00666 | SUPFAM:SSF54277 |
| UniParc:UPI0004EE9E48 | SEG:seg | : | : | : | : |
Description
BnaA06g35090DBnaA06g35090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT27]
Coordinates
chrLK032076:-:593249..597944
Molecular Weight (calculated)
78391.4 Da
IEP (calculated)
6.272
GRAVY (calculated)
-0.675
Length
724 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGFPAITRK RSFCAVASTV VPTTTVPVPP PPHATTSYPE SLDSSPRSRT TDGWDDLHAP SAVSSKLRLM CSYGGHILPR PHDKSLCYMG GDTRIVVVDR
101: NSSLSSLVAR LSNKLLDGRS FTLKYQLPSE DLDSLISVTT DEDLENMIEE YDRTISAPNS TKPSRLRLFL FTSKPEATQS MGQILESSAK SDDWFLNALN
201: SAGLLNRGFS DSDANVNRLL GLDDGLRSSP GDNGDNLDSS VKDDDGSVKS GKQQQQIQEP SPPQLPQQQQ GGQDVHSMPD SPMLDTSSSF GSTSSSPLPA
301: NLPPIRVHVE EAGGVKGMQD QRMGIEEQFA RFNVGNKQQQ VQQEDGFAAI SSPPPPLPVT ISLPAAPVNA AAANVSSEFQ TRVFSDDERS DHGVPAGYRK
401: PPTPRSQPQN LPPQQVHHVK SNSGGHELPS PHSVSSDSSM NNPVYQQRPS LYQDPMSQMP SGSTVVTGMI NPSDPNTLLP QNHMQNQDPG YILHPQFEQQ
501: SAPSQQQQFI HAAAPPQYIH HHPSGGLPMQ TYIQVYPSQQ PQSFHRQPGQ LDQQQPYPAV YYVTTPVPPR PYNMAVPQSG SVSEAPGSVH SNHPQAPPNS
601: MMAPPPNSQL RSVPGGKPEA GVYTTPQGMA GAQMVHQIPT SQQQFMGYSQ IHHPPQSGSA AIPSYGYEYA DNAHKQMFYT QPVGHAQYQT MTGPPPAMVL
701: PDGSAAAKLP AENMTQQIRS SQPL
101: NSSLSSLVAR LSNKLLDGRS FTLKYQLPSE DLDSLISVTT DEDLENMIEE YDRTISAPNS TKPSRLRLFL FTSKPEATQS MGQILESSAK SDDWFLNALN
201: SAGLLNRGFS DSDANVNRLL GLDDGLRSSP GDNGDNLDSS VKDDDGSVKS GKQQQQIQEP SPPQLPQQQQ GGQDVHSMPD SPMLDTSSSF GSTSSSPLPA
301: NLPPIRVHVE EAGGVKGMQD QRMGIEEQFA RFNVGNKQQQ VQQEDGFAAI SSPPPPLPVT ISLPAAPVNA AAANVSSEFQ TRVFSDDERS DHGVPAGYRK
401: PPTPRSQPQN LPPQQVHHVK SNSGGHELPS PHSVSSDSSM NNPVYQQRPS LYQDPMSQMP SGSTVVTGMI NPSDPNTLLP QNHMQNQDPG YILHPQFEQQ
501: SAPSQQQQFI HAAAPPQYIH HHPSGGLPMQ TYIQVYPSQQ PQSFHRQPGQ LDQQQPYPAV YYVTTPVPPR PYNMAVPQSG SVSEAPGSVH SNHPQAPPNS
601: MMAPPPNSQL RSVPGGKPEA GVYTTPQGMA GAQMVHQIPT SQQQFMGYSQ IHHPPQSGSA AIPSYGYEYA DNAHKQMFYT QPVGHAQYQT MTGPPPAMVL
701: PDGSAAAKLP AENMTQQIRS SQPL
001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.