CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40994	Canola	cytosol	99.47	99.65
CDX92217	Canola	cytosol	91.07	88.74
CDY68695	Canola	nucleus	68.65	71.27
CDY66514	Canola	nucleus	78.11	69.25
AT3G18230.1	Thale cress	nucleus, plastid	75.13	64.41
Zm00001d003965_P001	Maize	mitochondrion	9.81	50.91
HORVU3Hr1G008310.1	Barley	cytosol	11.73	46.85
CDY36115	Canola	cytosol, nucleus, vacuole	16.81	37.07
GSMUA_AchrUn_...	Banana	nucleus	25.04	37.05
CDY24410	Canola	cytosol	16.64	36.82
KRH39133	Soybean	cytosol	42.21	36.02
KRH48572	Soybean	cytosol	39.93	35.57
GSMUA_Achr10P...	Banana	nucleus	21.02	35.5
VIT_17s0000g03180.t01	Wine grape	nucleus	39.4	35.27
Solyc03g118870.2.1	Tomato	nucleus	37.83	33.91
PGSC0003DMT400014442	Potato	nucleus	40.63	33.87
CDX83621	Canola	mitochondrion	10.51	33.15
CDY13638	Canola	mitochondrion	10.51	33.15
CDY28543	Canola	plastid	9.81	31.82
CDY48987	Canola	plastid	9.81	31.28
CDY17690	Canola	nucleus, plastid	39.05	30.8
CDY25942	Canola	nucleus, plastid	33.8	30.73
CDY66304	Canola	cytosol	8.93	30.72
CDY61217	Canola	cytosol, mitochondrion	8.76	30.12
CDY41073	Canola	nucleus, plastid	33.27	30.11
GSMUA_Achr8P18320_001	Banana	nucleus	26.97	29.73
GSMUA_Achr2P07240_001	Banana	nucleus	27.85	28.91
CDY41501	Canola	cytosol	9.28	28.04
CDY31319	Canola	nucleus	13.66	27.96
CDX84387	Canola	nucleus	9.46	27.55
CDY39571	Canola	plastid	8.76	27.32
CDY46377	Canola	nucleus	18.91	27.27
CDY48129	Canola	cytosol, nucleus, plastid	9.11	27.23
CDY62874	Canola	nucleus	18.91	27.2
CDY72321	Canola	plastid	8.41	26.82
CDY48161	Canola	plastid	8.58	26.78
GSMUA_Achr1P21240_001	Banana	nucleus	27.85	26.5
Zm00001d039916_P010	Maize	nucleus	29.77	25.8
CDY20093	Canola	extracellular, plasma membrane	8.76	25.77
CDX91230	Canola	nucleus	19.79	25.57
EES00348	Sorghum	nucleus	29.42	25.34
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	31.0	25.29
CDX97304	Canola	nucleus	19.61	25.23
Zm00001d008591_P001	Maize	mitochondrion	29.25	25.11
Os01t0139200-01	Rice	nucleus	29.25	24.89
CDX83177	Canola	mitochondrion	11.56	24.81
CDY21444	Canola	mitochondrion	11.38	24.62
TraesCS3D01G050900.1	Wheat	nucleus	28.55	24.59
CDY16375	Canola	nucleus	11.91	24.11
CDX70680	Canola	plastid	19.26	23.86
CDX78676	Canola	plastid	18.74	23.83
CDX91540	Canola	nucleus	11.73	23.76
TraesCS3A01G051800.1	Wheat	nucleus	28.72	23.3
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	28.55	23.19
TraesCS3B01G060500.1	Wheat	cytosol	26.8	23.11
CDX69461	Canola	plastid	19.61	23.09
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	28.72	19.39
CDY46804	Canola	nucleus	16.11	19.33
CDY58263	Canola	nucleus	15.76	18.79
CDX84525	Canola	nucleus	15.59	18.35
CDX69896	Canola	nucleus	14.36	17.45
CDY21590	Canola	nucleus	14.19	17.05

Protein Annotations

EnsemblPlants:CDY24442	EnsemblPlantsGene:GSBRNA2T00026698001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF27	PFAM:PF00564	PFscan:PS51745
ProteinID:CDY24442	ProteinID:CDY24442.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EF41CA
UniProt:A0A078GGY6	MapMan:35.2	:	:	:	:

Description

BnaC05g35120DBnaC05g35120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGY6]

Coordinates

chrLK032159:+:89313..96635

Molecular Weight (calculated)

62379.5 Da

IEP (calculated)

5.126

GRAVY (calculated)

-0.433

Length

571 amino acids

Sequence
(BLAST)

001: METPLSSIPQ LVPNLTSATM VDGTSPRAIA LDTELLASVP DTKLRLMCSF GGHIMPRPHD MALTYSSGET RLVVVDRRSS LASLRSRLSS MLLNGRSFTL
101: KYQLPNEDLD SLVTITTDED LENMIEEYDR ATSSATTSAT HRIRLFLFAN KLETAATMGS LLNSAKSETW FVDALNQSGL LPRGLSDSAA VNNTLVNLDE
201: GTGGETEVQE LETDVGGENK RGDYITNDVM FHQEMHMSSM PDSPMLEPTG GSSSSSPSTA NLPPIHVRVS EEQFAHQPMM GYNNAPIDNV TAVRNGQASS
301: DDDRSDPSVM VGYKKPPLPM QPLLIPLRGA GGYSLASPDS IASDTSISSA TSFPKPMYYQ DQPPAIPKAP ITHPETTLVQ TSHGIPLHET TSVQTTSHVI
401: SQSGTYTTMD QQHQLQVQQP LLHQGVQYIP HPSQYIPVYS HQQQNYPVYV MSVPQSQQYV PSRTPPLCPN ARPEAGQNVY QAVISQNPQV HQIQQQQLQQ
501: PQHQYMSYSG GPLETMYFHA QHPPVSNAIP LVSPYQSMTP AAAAAALADM SKQMTLDNDK EQQHIAASQL L

Best Arabidopsis Sequence Match ( AT3G18230.1 )
(BLAST)

001: METPLPPLSQ LTPNPTPAAA VSSAIPAPVK SVAVQQPIDG SPRAVATDTG GIPEPLAAVP GAKLRLMCSF GGHIMPRPHD KSLTYSGGET RIVVVDRRAS
101: LSSLRSRLSS MLLNGRSFTL KYQLPSEDLD SLVTITTDED LENMIEEYDR AASSATATAT QRLRLFLFAN KLETAATMGS LLDGTKSDTW FVDALNQSGL
201: LPRGLSDSAA VNNTLVNLDE ASGGETEIQN LETNVGGENN KRGDLVANGV ISHQEMHMSS MPDSPMMEAA GSSIGSSSSS PSTSNLPPIR VRVSEDQRIE
301: EQLAQMTFSN MQTQRQFDDG VSLMANRPMM IPPGAMNDAA MAYNNAPGDG TAPASNGHVS PEDDRSELGV STGYRKPPLP MQPVTIPPRT VGGYGLTSPD
401: SVASDTSISS ATSFSKPMYY QDQPPALPRA PPVAQPETTS AQSSQVLPQT ENTSAQTTSH VLSQPGTYTT MDQQQQQPLA QQPFLHQGVQ YIPHPSQYIP
501: IYSHQQQNYP VYVMSVPQSQ QYIPAGTPPL YPNSKPGTNS RPEAAQNVYR AAPPQVIQLQ QQHQYMGYAG APQHSTNANA NYGTGAPQHS TNANANYGGP
601: FEYTNSPNET VYYHTQAPAA NTAIPLASPY QSMTPAAAAA ALADMSKQMA LDGGKQQQHM AASQPL

Arabidopsis Description

At3g18230 [Source:UniProtKB/TrEMBL;Acc:Q9LJQ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.