Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G64430.1 | CDX73744 | AT3G51180.1 | 21798944 |
| AT5G64430.1 | CDX77980 | AT3G51180.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57272 | Soybean | cytosol | 21.86 | 66.3 |
| Bra031918.1-P | Field mustard | nucleus | 93.55 | 55.06 |
| CDY46804 | Canola | nucleus | 91.4 | 53.57 |
| AT5G64430.1 | Thale cress | nucleus | 78.14 | 42.5 |
| CDY58263 | Canola | nucleus | 72.4 | 42.17 |
| CDX84525 | Canola | nucleus | 72.4 | 41.65 |
| CDX69896 | Canola | nucleus | 65.23 | 38.72 |
| CDY21590 | Canola | nucleus | 65.59 | 38.53 |
| KRH42038 | Soybean | cytosol | 51.25 | 30.04 |
| KRH49860 | Soybean | nucleus | 50.9 | 30.02 |
| VIT_03s0097g00600.t01 | Wine grape | nucleus | 48.75 | 29.12 |
| KRH21700 | Soybean | nucleus | 45.88 | 29.09 |
| CDY48987 | Canola | plastid | 18.64 | 29.05 |
| CDY28543 | Canola | plastid | 18.28 | 28.98 |
| KRH10652 | Soybean | cytosol | 46.24 | 28.92 |
| CDX83621 | Canola | mitochondrion | 18.64 | 28.73 |
| PGSC0003DMT400008036 | Potato | nucleus | 50.18 | 28.51 |
| CDY66304 | Canola | cytosol | 16.85 | 28.31 |
| Solyc01g106320.2.1 | Tomato | extracellular | 49.82 | 28.19 |
| CDY61217 | Canola | cytosol, mitochondrion | 16.49 | 27.71 |
| CDY13638 | Canola | mitochondrion | 17.56 | 27.07 |
| CDY41501 | Canola | cytosol | 18.28 | 26.98 |
| CDY72321 | Canola | plastid | 16.85 | 26.26 |
| CDX84387 | Canola | nucleus | 18.28 | 26.02 |
| CDY48161 | Canola | plastid | 16.49 | 25.14 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 17.2 | 25.13 |
| CDY39571 | Canola | plastid | 16.13 | 24.59 |
| HORVU3Hr1G075060.1 | Barley | cytosol, peroxisome | 25.45 | 23.91 |
| CDY21444 | Canola | mitochondrion | 22.58 | 23.86 |
| CDY20093 | Canola | extracellular, plasma membrane | 16.49 | 23.71 |
| CDX83177 | Canola | mitochondrion | 22.58 | 23.68 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 21.86 | 23.55 |
| CDY24410 | Canola | cytosol | 21.51 | 23.26 |
| CDY16375 | Canola | nucleus | 23.3 | 23.05 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 33.69 | 22.71 |
| CDX91540 | Canola | nucleus | 22.94 | 22.7 |
| Zm00001d051939_P001 | Maize | cytosol | 39.07 | 20.26 |
| EES07730 | Sorghum | cytosol | 39.07 | 19.26 |
| TraesCS6A01G380500.1 | Wheat | cytosol | 36.2 | 18.98 |
| Zm00001d018447_P001 | Maize | extracellular | 37.28 | 18.98 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 32.97 | 18.89 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 36.2 | 18.33 |
| CDY62874 | Canola | nucleus | 25.45 | 17.88 |
| CDY46377 | Canola | nucleus | 25.09 | 17.68 |
| TraesCS6B01G419500.1 | Wheat | cytosol | 31.18 | 17.65 |
| TraesCS6D01G365200.1 | Wheat | cytosol | 30.47 | 17.38 |
| CDX91230 | Canola | nucleus | 26.52 | 16.74 |
| CDX97304 | Canola | nucleus | 26.52 | 16.67 |
| CDY68695 | Canola | nucleus | 27.6 | 14.0 |
| CDY40994 | Canola | cytosol | 27.96 | 13.68 |
| CDY24442 | Canola | cytosol | 27.96 | 13.66 |
| CDX78676 | Canola | plastid | 21.86 | 13.59 |
| CDX70680 | Canola | plastid | 22.22 | 13.45 |
| CDX69461 | Canola | plastid | 23.3 | 13.4 |
| CDY25942 | Canola | nucleus, plastid | 30.11 | 13.38 |
| CDY41073 | Canola | nucleus, plastid | 30.11 | 13.31 |
| CDX92217 | Canola | cytosol | 27.6 | 13.14 |
| CDY17690 | Canola | nucleus, plastid | 32.97 | 12.71 |
| CDY66514 | Canola | nucleus | 27.96 | 12.11 |
Protein Annotations
| EnsemblPlants:CDY31319 | EnsemblPlantsGene:GSBRNA2T00047492001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF2 | PFAM:PF00564 | ProteinID:CDY31319 |
| ProteinID:CDY31319.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EDE8A4 | UniProt:A0A078H1J7 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA02g34220DBnaA02g34220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1J7]
Coordinates
chrLK032270:+:202895..203734
Molecular Weight (calculated)
31951.8 Da
IEP (calculated)
7.303
GRAVY (calculated)
-0.738
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKLSYNSYP DSTDSSPRSR EIDFDNPPPW DEHNHQSYKV RFMCSSCGKI QPRPHDNQLT YVNGETKILS VDRGIRFPVL ASKLSAVCGG VGDVLFKYQL
101: PGEDLDALIS VTNDDDLEHM MHEYDRLLRV SFKPARMRLF LFPVSSGGFG PEGSSHSDRD RFVEALNTFR NRSEPEKTVT GPVNSADFLF GTEKVVAPPP
201: PPAAPVVLEP QPPVIQPDHA AEMQNQMLEF QRMQVRDQEQ QQEAVYRRKS EDGLIFSPPY APRLRRRRRF HKTVHKRLQ
101: PGEDLDALIS VTNDDDLEHM MHEYDRLLRV SFKPARMRLF LFPVSSGGFG PEGSSHSDRD RFVEALNTFR NRSEPEKTVT GPVNSADFLF GTEKVVAPPP
201: PPAAPVVLEP QPPVIQPDHA AEMQNQMLEF QRMQVRDQEQ QQEAVYRRKS EDGLIFSPPY APRLRRRRRF HKTVHKRLQ
001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAIHQNQLH HQQEVIHQNQ LLQQEAIHQN
301: QMLQQQQQQE AMYRRKTEDE AGRYFPPTYT QNPAPVTNQQ PPVGYWQGNT NNSNIQGNIY TTTSQNLPEQ QQQQQQVYMI PAQSQAPGTL YQSVMRPTVQ
401: GNQGYYPSPV QRLHHPDAYM EQQNQPGYNV VQPQPTFSGG PQVMTSVGPQ VMTSVGPPMG LQEPYSQMGK PVYYTVAGEG MMVQPPPAQP QQQQQQYQGM
501: GQPVSGMTDL RTGPDGKVAV NMAAPQVSDS V
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.