Factsheet for Solyc01g106320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

extracellular: 22364583
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g038790.1.1
Solyc02g084080.1.1
Solyc02g084110.1.1
Solyc02g084160.1.1
Solyc02g084200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64430.1	Solyc02g038790.1.1	AT3G51180.1	21798944
AT5G64430.1	Solyc02g084080.1.1	AT3G51180.1	21798944
AT5G64430.1	Solyc02g084110.1.1	AT3G51180.1	21798944
AT5G64430.1	Solyc02g084160.1.1	AT3G51180.1	21798944
AT5G64430.1	Solyc02g084200.1.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008036	Potato	nucleus	95.33	95.72
KRH57272	Soybean	cytosol	11.76	63.04
VIT_03s0097g00600.t01	Wine grape	nucleus	52.54	55.46
KRH21700	Soybean	nucleus	45.44	50.91
KRH10652	Soybean	cytosol	45.23	50.0
CDY31319	Canola	nucleus	28.19	49.82
KRH42038	Soybean	cytosol	46.86	48.53
KRH49860	Soybean	nucleus	46.45	48.41
Solyc04g076820.1.1	Tomato	plastid	44.42	46.2
CDY58263	Canola	nucleus	43.41	44.68
CDX84525	Canola	nucleus	43.41	44.12
Bra031918.1-P	Field mustard	nucleus	41.58	43.25
Bra024295.1-P	Field mustard	nucleus	37.93	43.09
CDY46804	Canola	nucleus	41.38	42.86
AT5G64430.1	Thale cress	nucleus	44.42	42.69
CDX69896	Canola	nucleus	40.57	42.55
Bra009393.1-P	Field mustard	nucleus	40.57	42.19
CDY21590	Canola	nucleus	40.37	41.89
Solyc02g091670.1.1	Tomato	cytosol	22.92	41.85
AT5G09620.1	Thale cress	nucleus	41.18	38.23
Zm00001d051939_P001	Maize	cytosol	33.47	30.67
EES07730	Sorghum	cytosol	34.28	29.86
TraesCS6B01G419500.1	Wheat	cytosol	29.82	29.82
Zm00001d018447_P001	Maize	extracellular	33.06	29.74
GSMUA_Achr1P20460_001	Banana	cytosol, plastid	24.95	29.71
TraesCS6A01G380500.1	Wheat	cytosol	31.64	29.32
TraesCS6D01G365200.1	Wheat	cytosol	28.8	29.04
Solyc05g013530.2.1	Tomato	plastid	12.78	28.77
HORVU6Hr1G089280.5	Barley	cytosol, mitochondrion, nucleus	31.44	28.13
Solyc06g071750.2.1	Tomato	plastid	10.95	27.98
GSMUA_Achr1P05710_001	Banana	cytosol	25.76	26.08
Solyc02g079360.1.1	Tomato	nucleus	18.46	23.64
HORVU3Hr1G075060.1	Barley	cytosol, peroxisome	14.2	23.57
Solyc05g008830.2.1	Tomato	nucleus	25.96	19.91
Solyc04g007460.2.1	Tomato	plastid	25.15	18.18
Solyc02g086360.2.1	Tomato	cytosol	20.28	17.95
Solyc03g118870.2.1	Tomato	nucleus	21.5	16.64

Protein Annotations

EnsemblPlants:Solyc01g106320.2.1	EnsemblPlantsGene:Solyc01g106320.2	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF2	PFAM:PF00564	SEG:seg
SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI00027676EB	UniProt:K4B2K0	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:-:94245142..94247008

Molecular Weight (calculated)

54073.8 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.603

Length

493 amino acids

Sequence
(BLAST)

001: MENYSYTSYP ESGDSSPRSR EIDFENTAAW EDPNQIPNYK VKFMCSYGGK IHPRPHDNQL AYIGGETKIL SVERNTKFPL LISKLAAICD TDTVSFKYQL
101: PGEDLDALIS VTNDDDLEHM MHEYDRLYRA SPKPARLRLF LFPANTPATV GSGVSQSRSF GSEDSKSEKD RFVDALNSGP IQASPAAGAV AQQVGNADFL
201: FGSEKGMVPP HVKLRDPNSE QVVKEPEMPV HGVDDRMMGT DPIQKHIQDL QRLHLEEQQN LYRRKSDDNL TAAFPGGDYY VQRGPEKIAS PTVPGTVPAQ
301: VGYWQEKQVP GGVLPASSLG MEQPVYMIHQ APAGAYQPHQ HQHQHPQFVR PMAGPPGQGY YAVQRMPQEP YRDQPVYNVM PSLPQAVPTV AAAPPTLQSQ
401: VPPKVAGYSE GYGMVRPATT MGVGVADAGG YTQMAYDGGV GRQMYYPPQG GVIAPPQQQP QYHAMPPQAV VGSDMRPQEA AKVVPVKPTQ TSV

Best Arabidopsis Sequence Match ( AT5G64430.1 )
(BLAST)

001: MEKFSYNSYP DSTDSSPRSR EIEFDNPPPP WDDQNQNQQQ HSYKVKFMCS YGGKIQPRPH DNQLTYVNGE TKILSVDRGI RFPVLASKLS TVCGGGDGGG
101: GEVTFKYQLP GEDLDALISV TNDDDLEHMM HEYDRLLRLS SKPARMRLFL FPASSGFGSQ SSTQSDRDRF VEALNTVPRL SESEKSVTAP PNNADFLFGS
201: EKVAAPPPPP PAEVKLPVPV ALEPPLFNDP RVIQPDHVVN PMEIQRQMQE FQRMHIRDQE QQQQQEAVYR RKSNEDGLIE TGGGYFSPPY IQNPAPPPPQ
301: QTIPQTNPQA PPMTTFWQGN HNPGVVFPTT THGLGLPEQP VYMIPSPSPS PVYHAPPPPQ PQGVIRPILT GQVNQGGYYP QVQRVASDTY REPHQSPYNV
401: AQPLQAPIGT KAAQQQQPPP PQPFTSGPPP PQYTAVPPPR QVVGLPDTSA YTQVTYTGGM GKQVYYTEAP PPQYHGVGLP VTGMSELRTG PDGKLVAMNM
501: APKVSSQSSD SAV

Arabidopsis Description

At5g64430 [Source:UniProtKB/TrEMBL;Acc:Q9FGF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.