Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009393.1-P | Field mustard | nucleus | 99.15 | 98.31 |
| CDY21590 | Canola | nucleus | 94.89 | 93.89 |
| KRH57272 | Soybean | cytosol | 13.4 | 68.48 |
| AT5G09620.1 | Thale cress | nucleus | 77.23 | 68.36 |
| CDY31319 | Canola | nucleus | 38.72 | 65.23 |
| CDY58263 | Canola | nucleus | 61.49 | 60.33 |
| CDX84525 | Canola | nucleus | 61.7 | 59.79 |
| CDY46804 | Canola | nucleus | 59.57 | 58.82 |
| KRH10652 | Soybean | cytosol | 41.91 | 44.17 |
| VIT_03s0097g00600.t01 | Wine grape | nucleus | 42.77 | 43.04 |
| KRH21700 | Soybean | nucleus | 40.0 | 42.73 |
| KRH49860 | Soybean | nucleus | 41.7 | 41.44 |
| KRH42038 | Soybean | cytosol | 41.91 | 41.39 |
| PGSC0003DMT400008036 | Potato | nucleus | 42.98 | 41.14 |
| Solyc01g106320.2.1 | Tomato | extracellular | 42.55 | 40.57 |
| CDY28543 | Canola | plastid | 12.55 | 33.52 |
| CDX83621 | Canola | mitochondrion | 12.55 | 32.6 |
| CDY66304 | Canola | cytosol | 11.49 | 32.53 |
| CDY48987 | Canola | plastid | 12.34 | 32.4 |
| CDY13638 | Canola | mitochondrion | 12.13 | 31.49 |
| CDY61217 | Canola | cytosol, mitochondrion | 11.06 | 31.33 |
| CDY41501 | Canola | cytosol | 11.28 | 28.04 |
| CDY48129 | Canola | cytosol, nucleus, plastid | 11.28 | 27.75 |
| CDY72321 | Canola | plastid | 10.43 | 27.37 |
| CDY39571 | Canola | plastid | 10.64 | 27.32 |
| CDY48161 | Canola | plastid | 10.64 | 27.32 |
| CDY20093 | Canola | extracellular, plasma membrane | 11.28 | 27.32 |
| GSMUA_Achr1P20460_001 | Banana | cytosol, plastid | 24.04 | 27.29 |
| CDX84387 | Canola | nucleus | 11.28 | 27.04 |
| CDY36115 | Canola | cytosol, nucleus, vacuole | 14.89 | 27.03 |
| CDY24410 | Canola | cytosol | 14.68 | 26.74 |
| Zm00001d051939_P001 | Maize | cytosol | 30.0 | 26.21 |
| TraesCS6A01G380500.1 | Wheat | cytosol | 28.72 | 25.38 |
| HORVU3Hr1G075060.1 | Barley | cytosol, peroxisome | 15.96 | 25.25 |
| Zm00001d018447_P001 | Maize | extracellular | 29.36 | 25.18 |
| CDY16375 | Canola | nucleus | 14.89 | 24.82 |
| TraesCS6B01G419500.1 | Wheat | cytosol | 25.96 | 24.75 |
| TraesCS6D01G365200.1 | Wheat | cytosol | 25.74 | 24.74 |
| CDY21444 | Canola | mitochondrion | 13.83 | 24.62 |
| EES07730 | Sorghum | cytosol | 29.57 | 24.56 |
| CDX83177 | Canola | mitochondrion | 13.83 | 24.44 |
| HORVU6Hr1G089280.5 | Barley | cytosol, mitochondrion, nucleus | 28.51 | 24.32 |
| CDX91540 | Canola | nucleus | 14.47 | 24.11 |
| GSMUA_Achr1P05710_001 | Banana | cytosol | 24.89 | 24.02 |
| CDY46377 | Canola | nucleus | 17.66 | 20.96 |
| CDY62874 | Canola | nucleus | 17.66 | 20.91 |
| CDX91230 | Canola | nucleus | 18.09 | 19.23 |
| CDX97304 | Canola | nucleus | 18.09 | 19.14 |
| CDX69461 | Canola | plastid | 17.66 | 17.11 |
| CDX78676 | Canola | plastid | 15.74 | 16.48 |
| CDY41073 | Canola | nucleus, plastid | 21.91 | 16.32 |
| CDY25942 | Canola | nucleus, plastid | 21.49 | 16.08 |
| CDX70680 | Canola | plastid | 15.53 | 15.84 |
| CDY17690 | Canola | nucleus, plastid | 22.98 | 14.92 |
| CDY40994 | Canola | cytosol | 17.45 | 14.39 |
| CDY24442 | Canola | cytosol | 17.45 | 14.36 |
| CDX92217 | Canola | cytosol | 17.45 | 13.99 |
| CDY66514 | Canola | nucleus | 17.66 | 12.89 |
| CDY68695 | Canola | nucleus | 14.89 | 12.73 |
Protein Annotations
| EnsemblPlants:CDX69896 | EnsemblPlantsGene:GSBRNA2T00135965001 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000270 | InterPro:PB1_dom | ncoils:Coil | PANTHER:PTHR31066 | PANTHER:PTHR31066:SF2 | PFAM:PF00564 |
| ProteinID:CDX69896 | ProteinID:CDX69896.1 | SEG:seg | SMART:SM00666 | SUPFAM:SSF54277 | UniParc:UPI0004EDE29D |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA10g22450D
Coordinates
chrLK031790:+:2273368..2274981
Molecular Weight (calculated)
52301.0 Da
IEP (calculated)
5.390
GRAVY (calculated)
-0.844
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKFSYNSYP DSAESSPRSR DVDFDNPPPW EDQTQQTHSY KVKFMCSYGG KIQPRPHDNQ LTYVNGDTKI LSVDRGIRFP ALASKLSAVV GGDGGGGEIS
101: FKYQLPGEDL DALISVTNED DLEHMMHEYD RLLRMSSKPA RMRLFLFPLS SPVSTGGGFG SEGSTKSDRE TLNNTITNRP ESEKSVMAPA SNADFLFGSE
201: KVVVAPPAPA SPPQQIIQDP QMFVNQQVIT PEQHPVDIQR QIHEFQRIQI RDQEQQMQQQ LQQEAMYRRK SEDGRYFTPT YAQNQPPTTT VSQTNQQPPV
301: GYWQGNNNVP GNNIYTTTSQ NLPEQQVYMI PAQSQAPGTL YHSVMRPPTQ GNQGYFPPVQ QRVQQHHPDP YMEQQNNQQG YNVVQPPQPA YSGGPQVMSS
401: GPMGLHETQP YSQMGNPVYY TVAGDGMMVP PQPHQPQYQG MGQPVSGMTG PDGKVVVNTA PKVSQSSDSV
101: FKYQLPGEDL DALISVTNED DLEHMMHEYD RLLRMSSKPA RMRLFLFPLS SPVSTGGGFG SEGSTKSDRE TLNNTITNRP ESEKSVMAPA SNADFLFGSE
201: KVVVAPPAPA SPPQQIIQDP QMFVNQQVIT PEQHPVDIQR QIHEFQRIQI RDQEQQMQQQ LQQEAMYRRK SEDGRYFTPT YAQNQPPTTT VSQTNQQPPV
301: GYWQGNNNVP GNNIYTTTSQ NLPEQQVYMI PAQSQAPGTL YHSVMRPPTQ GNQGYFPPVQ QRVQQHHPDP YMEQQNNQQG YNVVQPPQPA YSGGPQVMSS
401: GPMGLHETQP YSQMGNPVYY TVAGDGMMVP PQPHQPQYQG MGQPVSGMTG PDGKVVVNTA PKVSQSSDSV
001: MDKFSYNSYP DSAESSPRSR DVEFENPSPW EDQQQQNYKV KLMCSYGGKI QPRPHDNQLT YVNGDTKIMS VDRGIRFPAL VSKLSAVCSG GGDGGEISFK
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAMYRRKTE DEAGRYFPPT YTQNPAPVTN
301: QQPPVGYWQG NTNNSNIQGN IYTTTSQNLP EQQQQQQQVY MIPAQSQAPG TLYQSVMRPT VQGNQGYYPS PVQRLHHPDA YMEQQNQPGY NVVQPQPTFS
401: GGPQVMTSVG PQVMTSVGPP MGLQEPYSQM GKPVYYTVAG EGMMVQPPPA QPQQQQQQYQ GMGQPVSGMT DLRTGPDGKV AVNMAAPQVS DSV
101: YQLPGEDLDA LISVTNDEDL EHMMHEYDRL LRLSTKPARM RLFLFPSSPI SGGFGSEGST KSDRDTLNPI PSRPESEKSV TAPPNNADFL FGSEKVAPIP
201: PSPVKVPQPV PEPVVLEPPQ MFVDQRMLQP EHGVNPAEIQ RQIQEFQMIQ IRDQEQQMLH QNQLHQQQQQ QEAMYRRKTE DEAGRYFPPT YTQNPAPVTN
301: QQPPVGYWQG NTNNSNIQGN IYTTTSQNLP EQQQQQQQVY MIPAQSQAPG TLYQSVMRPT VQGNQGYYPS PVQRLHHPDA YMEQQNQPGY NVVQPQPTFS
401: GGPQVMTSVG PQVMTSVGPP MGLQEPYSQM GKPVYYTVAG EGMMVQPPPA QPQQQQQQYQ GMGQPVSGMT DLRTGPDGKV AVNMAAPQVS DSV
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LXC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.