CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017462.1-P	Field mustard	cytosol, plastid	89.81	87.85
CDY41073	Canola	nucleus, plastid	87.58	87.16
CDY17690	Canola	nucleus, plastid	75.96	65.88
Zm00001d003965_P001	Maize	mitochondrion	9.71	55.45
VIT_01s0011g04140.t01	Wine grape	nucleus	49.84	44.91
HORVU3Hr1G008310.1	Barley	cytosol	10.03	44.06
KRH35888	Soybean	nucleus	49.52	43.99
KRG90906	Soybean	nucleus, plastid	48.73	42.44
GSMUA_AchrUn_...	Banana	nucleus	25.96	42.23
GSMUA_Achr10P...	Banana	nucleus	20.7	38.46
Solyc05g008830.2.1	Tomato	nucleus	39.17	38.26
KRH38173	Soybean	nucleus	39.17	37.73
CDY24410	Canola	cytosol	15.13	36.82
CDY36115	Canola	cytosol, nucleus, vacuole	15.13	36.68
CDY28543	Canola	plastid	10.03	35.8
GSMUA_Achr8P18320_001	Banana	nucleus	29.3	35.52
CDY48987	Canola	plastid	10.03	35.2
CDY13638	Canola	mitochondrion	9.87	34.25
GSMUA_Achr2P07240_001	Banana	nucleus	29.94	34.18
CDY68695	Canola	nucleus	29.94	34.18
CDY40994	Canola	cytosol	30.73	33.86
CDY24442	Canola	cytosol	30.73	33.8
CDX83621	Canola	mitochondrion	9.71	33.7
CDX92217	Canola	cytosol	31.21	33.45
CDY66514	Canola	nucleus	33.12	32.3
CDX84387	Canola	nucleus	10.03	32.14
CDY41501	Canola	cytosol	9.55	31.75
CDY39571	Canola	plastid	9.24	31.69
Zm00001d039916_P010	Maize	nucleus	32.8	31.26
EES00348	Sorghum	nucleus	32.96	31.22
CDY48161	Canola	plastid	9.08	31.15
Zm00001d008591_P001	Maize	mitochondrion	32.8	30.98
CDY48129	Canola	cytosol, nucleus, plastid	9.39	30.89
Os01t0139200-01	Rice	nucleus	32.96	30.85
GSMUA_Achr1P21240_001	Banana	nucleus	29.14	30.5
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	33.76	30.29
CDY72321	Canola	plastid	8.6	30.17
CDY31319	Canola	nucleus	13.38	30.11
CDY61217	Canola	cytosol, mitochondrion	7.8	29.52
CDY66304	Canola	cytosol	7.8	29.52
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	32.96	29.45
TraesCS3A01G051800.1	Wheat	nucleus	32.17	28.69
TraesCS3D01G050900.1	Wheat	nucleus	30.25	28.66
CDY62874	Canola	nucleus	17.99	28.46
CDY46377	Canola	nucleus	17.83	28.28
TraesCS3B01G060500.1	Wheat	cytosol	28.82	27.34
CDX91230	Canola	nucleus	18.79	26.7
CDX97304	Canola	nucleus	18.63	26.35
CDX70680	Canola	plastid	18.63	25.38
CDY20093	Canola	extracellular, plasma membrane	7.8	25.26
CDX78676	Canola	plastid	17.99	25.17
CDX69461	Canola	plastid	19.11	24.74
CDY21444	Canola	mitochondrion	10.19	24.24
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	32.01	23.76
CDX83177	Canola	mitochondrion	10.03	23.68
CDY16375	Canola	nucleus	10.51	23.4
CDX91540	Canola	nucleus	10.35	23.05
CDY46804	Canola	nucleus	16.88	22.27
CDY58263	Canola	nucleus	16.88	22.13
CDX69896	Canola	nucleus	16.08	21.49
CDX84525	Canola	nucleus	16.56	21.44
CDY21590	Canola	nucleus	15.92	21.05

Protein Annotations

EnsemblPlants:CDY25942	EnsemblPlantsGene:GSBRNA2T00033446001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	PFAM:PF00564	PFscan:PS51257
PFscan:PS51745	ProteinID:CDY25942	ProteinID:CDY25942.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277
UniParc:UPI0004EF42BE	UniProt:A0A078GLA5	MapMan:35.2	:	:	:

Description

BnaC09g20450DBnaC09g20450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLA5]

Coordinates

chrLK032183:-:194811..197054

Molecular Weight (calculated)

68465.7 Da

IEP (calculated)

6.197

GRAVY (calculated)

-0.663

Length

628 amino acids

Sequence
(BLAST)

001: MEPRPPSLSS TAVASTVVPA ATSCIPPPRP HVPSSYPESL DSSPKSRTTD AWDDLPPPGG GASSKLRLMC SYNGHILPRP QDKSLCYMGG ETRIIALDRT
101: SSLSSLITRL SNTLLNGRSF TLKYQLPSED LDSLISVTTD EDLDNMIEEY DRTISSAKPC RLRLFLFTAK PESTQSMGQV LESSAKSDDW FLNRGFSDSD
201: SDDNRLLGLD DTLRSNLVSK DDDGKHQQQI QQPPGGQDVH NLPDSPMLDT SSSFGSTSSS PSLANLPPIR VHVEEAKGMQ DQRLGIAEHF ARFNVGNKLQ
301: DDGFAAISSP PPMPAPVNAP TVSSGVFSDD ERSNHGVPAG YRKPPTQQVK SNSGGHEMPS PDSVSSDSSM SNSVFHQRPS VNQEPVSQMP SCSSTLVTGL
401: TNPSDPNTLL SHHQNQDSSY ILHPQQSQPQ QQQFIHSPQY LHHHPSTGLP LQSYIQVYPS QPQQSFHMHP SQLDHQPYPF YYTTAPVPPK PYNMPLTQSG
501: SVSDSLGSLP SSHPQTLPNS TMMAPPPNNH LRNTPQPTGG AQIVHQVPPI SLQQFMGYSQ IHHPPQSGSL GIPNYGYEYV ENAAPKQVYY TQQMGHAQYQ
601: MVLADGSPVA AKLPAENMAQ QIRSSQPM

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.