CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017462.1-P	Field mustard	cytosol, plastid	98.73	97.04
CDY25942	Canola	nucleus, plastid	87.16	87.58
CDY17690	Canola	nucleus, plastid	79.08	68.92
Zm00001d003965_P001	Maize	mitochondrion	9.19	52.73
VIT_01s0011g04140.t01	Wine grape	nucleus	51.03	46.2
KRH35888	Soybean	nucleus	49.92	44.55
KRG90906	Soybean	nucleus, plastid	49.6	43.41
HORVU3Hr1G008310.1	Barley	cytosol	9.83	43.36
GSMUA_AchrUn_...	Banana	nucleus	25.36	41.45
Solyc05g008830.2.1	Tomato	nucleus	40.73	39.97
KRH38173	Soybean	nucleus	38.99	37.73
GSMUA_Achr10P...	Banana	nucleus	19.65	36.69
CDY24410	Canola	cytosol	14.74	36.05
CDY36115	Canola	cytosol, nucleus, vacuole	14.74	35.91
GSMUA_Achr8P18320_001	Banana	nucleus	28.68	34.94
CDY28543	Canola	plastid	9.67	34.66
GSMUA_Achr2P07240_001	Banana	nucleus	29.79	34.18
CDY48987	Canola	plastid	9.67	34.08
CDY68695	Canola	nucleus	29.48	33.82
CDY13638	Canola	mitochondrion	9.67	33.7
CDY40994	Canola	cytosol	30.11	33.33
CDY24442	Canola	cytosol	30.11	33.27
CDX83621	Canola	mitochondrion	9.51	33.15
CDX92217	Canola	cytosol	30.59	32.94
CDY66514	Canola	nucleus	32.81	32.14
Zm00001d039916_P010	Maize	nucleus	32.65	31.26
EES00348	Sorghum	nucleus	32.81	31.22
CDX84387	Canola	nucleus	9.67	31.12
Zm00001d008591_P001	Maize	mitochondrion	32.49	30.83
Os01t0139200-01	Rice	nucleus	32.65	30.7
CDY41501	Canola	cytosol	9.19	30.69
CDY62874	Canola	nucleus	19.02	30.23
GSMUA_Achr1P21240_001	Banana	nucleus	28.68	30.17
CDY31319	Canola	nucleus	13.31	30.11
CDY39571	Canola	plastid	8.72	30.05
GSMUA_Achr11P...	Banana	plasma membrane, vacuole	33.28	30.0
CDY48129	Canola	cytosol, nucleus, plastid	9.03	29.84
CDY46377	Canola	nucleus	18.7	29.8
CDY48161	Canola	plastid	8.56	29.51
GSMUA_Achr6P09850_001	Banana	endoplasmic reticulum, extracellular	32.17	28.88
CDY72321	Canola	plastid	8.08	28.49
TraesCS3A01G051800.1	Wheat	nucleus	31.7	28.41
TraesCS3D01G050900.1	Wheat	nucleus	29.64	28.21
CDY66304	Canola	cytosol	7.29	27.71
CDY61217	Canola	cytosol, mitochondrion	7.29	27.71
CDX91230	Canola	nucleus	19.33	27.6
CDX97304	Canola	nucleus	19.18	27.25
TraesCS3B01G060500.1	Wheat	cytosol	28.37	27.04
CDX70680	Canola	plastid	18.23	24.95
CDX78676	Canola	plastid	17.59	24.72
CDX69461	Canola	plastid	18.86	24.54
CDY20093	Canola	extracellular, plasma membrane	7.29	23.71
HORVU3Hr1G008420.4	Barley	cytosol, nucleus	31.54	23.52
CDY21444	Canola	mitochondrion	9.67	23.11
CDY16375	Canola	nucleus	10.14	22.7
CDX83177	Canola	mitochondrion	9.51	22.56
CDX91540	Canola	nucleus	9.98	22.34
CDY58263	Canola	nucleus	16.96	22.34
CDY46804	Canola	nucleus	16.8	22.27
CDX69896	Canola	nucleus	16.32	21.91
CDX84525	Canola	nucleus	16.64	21.65
CDY21590	Canola	nucleus	16.16	21.47

Protein Annotations

EnsemblPlants:CDY41073	EnsemblPlantsGene:GSBRNA2T00072392001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000270	InterPro:PB1_dom	PANTHER:PTHR31066	PANTHER:PTHR31066:SF3	PFAM:PF00564	PFscan:PS51745
ProteinID:CDY41073	ProteinID:CDY41073.1	SEG:seg	SMART:SM00666	SUPFAM:SSF54277	UniParc:UPI0004EEC13F
UniProt:A0A078HWD0	MapMan:35.2	:	:	:	:

Description

BnaA09g18520DBnaA09g18520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWD0]

Coordinates

chrLK032489:+:173363..175602

Molecular Weight (calculated)

68688.2 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.635

Length

631 amino acids

Sequence
(BLAST)

001: MEPPPPSLSS TVVPAATSSI PPPPPHVPSS YPESLDSSPK SRTTDAWDDL PPPAGAASSK LRLMCSYNGH ILPRPHDKSL CYMGGDTRII ALDRTSSLSS
101: LITRLSNTLL NGRSVTLKYQ LPSEDLDSLI SLTTEEDLDN MIEEYDRTIS SAKPSRLRLF LFTAKPEATQ SMGQILESSA KSDDWFLNAL NRGSDVNRLL
201: GLDDAGDKDD DCKQQQQKQQ IQQPPPPQQG GQDVHNLPDS PMLDTSSSFG STSSSPSLAN LPPIRVHVEE AKGMQDQRLG IEEQFARFNV GNKIQDDGFA
301: AISSPPPMPV TITLPAAPVN ATTVSSEVFS DDGAPAGYRK PPTPRSQPTH QVKSVPSPDS VSSDSSMNNS VFHQRPSVYQ EPVSQMPSCS STVVTGLINP
401: SDPNTLLSHN QNQNRNQDSG YILHPQQQQF IHAPQYLHHH PSTGLPVQSY IQVYPSQPQQ SFHMHPSQLD HQPYPFYYAT APVPPKPYNI PLTQSGSVSD
501: SLGSLPSSHP QTLPNSTMMA PPPNNHLRNT PQATGGAQIV HQVPPISQQQ FMGYSQIHHP PQSGSAGIPN YGYEYVENAP KQVYYTQQMG HAQYQTMTGP
601: PPAMVLPDGF PVAAKLPAEN MTQQIQSSHP L

Best Arabidopsis Sequence Match ( AT2G01190.1 )
(BLAST)

001: MEPPPSSLSS TAVASTSISA ATAPVPPPLP PHVTSSYPES LDSSPRSRTT DGWDDLPAPS GGGGGGGGSA VSSKLRFMCS YGGHILPRPH DKSLCYMGGD
101: TRIVVVDRNS SLPSLIARLS NTLLDGRSFT LKYQLPSEDL DSLISVTTDE DLDNMIEEYD RTISASNSTK PSRLRLFLFT SKPEATQSMG QILESSAKSD
201: DWFLNALNSA GLLNRGFSDS DTNVNRLLGL DDALALRSNS GDNNNRDGDD GSVKSAKQQQ PPPPQQQEQQ QGGQDVNCLP DSPMLDTSSS FGSTSSSPSL
301: ANLPPIRVHV EEPGGVRTLP DQRNLGIEEQ FARFNVGNKH QLHDDGFAAI SSPPPMPVTI ALPAAPVTAA TVSNEFQARV YSDDERSDHG VQAGYRKPPT
401: PRSQPQNLPP QQAHQLKSNS GGGHELPSPN SVSSDSSMSN PMFHQRPSVY QEPIAQIPSG STVVTGMINP SDPSTLLSQH QNQDPAYILH PQFEQQSAQS
501: QPQQQFIHTA APPQYIHHHP SSGLPVPTYI QVYPSQQPQQ SFHQHAGRLD QQPYPVYYVT APVPPRPYSM PVPQSPSVSD AAGSIPSNHP NSTMMPPPPN
601: NHMRSVSSGK PEMGQAGVYT TAPGVGGAQM VHQIPTNQQQ FMGYSQIRHP PQSGSAGNPN YGYEYVDNAH TQIYYTQPMG HAQYQTMTGP PPAMVMPDGS
701: AAAKLPAENM TQQIRSSQPL

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU48]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.