Factsheet for Solyc02g084110.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g069830.2.1
Solyc02g086840.2.1
Solyc03g096000.2.1
Solyc04g016400.2.1
Solyc05g052510.2.1
Solyc06g005800.2.1
Solyc06g051310.2.1
Solyc06g076430.2.1
Solyc10g079890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	Solyc06g005800.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc06g076430.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc02g024070.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc02g069830.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G51180.1	Solyc04g016400.2.1	AT5G04170.1	21798944
AT3G51180.1	Solyc10g079890.1.1	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084160.1.1	Tomato	cytosol	42.76	40.88
Solyc02g084080.1.1	Tomato	cytosol	18.42	22.58
Solyc02g038790.1.1	Tomato	cytosol	27.63	20.9
Bra012068.1-P	Field mustard	cytosol	10.53	8.89
KRH76672	Soybean	nucleus	22.37	8.74
PGSC0003DMT400092162	Potato	nucleus	28.95	7.84
Solyc02g084200.1.1	Tomato	nucleus	28.95	7.41
KRH28782	Soybean	cytosol, nucleus, plastid	21.71	6.69
CDY45225	Canola	cytosol, nucleus, plastid	17.76	6.6
CDY67080	Canola	cytosol, nucleus, plastid	16.45	6.31
CDX73744	Canola	mitochondrion, nucleus	19.08	5.81
AT3G51180.1	Thale cress	nucleus	19.74	5.76
KRH28783	Soybean	nucleus	13.16	5.73
GSMUA_Achr3P11230_001	Banana	cytosol	17.11	5.62
AT5G66270.1	Thale cress	cytosol	16.45	5.57
CDX77980	Canola	mitochondrion, nucleus, plastid	17.11	5.51
Os04t0663200-01	Rice	cytosol	13.82	5.34
KRH69802	Soybean	mitochondrion	19.74	5.27
Bra036832.1-P	Field mustard	nucleus	17.11	5.24
KRH69800	Soybean	plastid	19.08	5.23
GSMUA_Achr1P19920_001	Banana	cytosol	15.13	5.16
Solyc12g089260.1.1	Tomato	nucleus	16.45	5.12
Zm00001d001952_P001	Maize	mitochondrion	13.82	4.65
VIT_04s0023g03180.t01	Wine grape	cytosol	20.39	4.35
EES13033	Sorghum	mitochondrion	12.5	4.22
HORVU2Hr1G109820.1	Barley	mitochondrion	12.5	3.6
Zm00001d026536_P002	Maize	nucleus	11.18	3.56
TraesCS2B01G520300.1	Wheat	mitochondrion	12.5	3.55
TraesCS2D01G492400.1	Wheat	mitochondrion	12.5	3.43
TraesCS2A01G492200.1	Wheat	mitochondrion	12.5	3.42
HORVU2Hr1G109740.2	Barley	plastid	12.5	3.07

Protein Annotations

EnsemblPlants:Solyc02g084110.1.1	EnsemblPlantsGene:Solyc02g084110.1	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	SEG:seg	UniParc:UPI0002768A54
UniProt:K4BAS7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2:+:47304421..47304879

Molecular Weight (calculated)

16716.3 Da

IEP (calculated)

6.520

GRAVY (calculated)

-0.115

Length

152 amino acids

Sequence
(BLAST)

001: MPTEEESTHD VTVYVATTVA ALVKRQEQDS LIDANLLIRF IFNLEQIPKL MNECGMTTNA ATVVSRKIVM SRLVDLLVPL SSTKLDKVIN KPINECQAPH
101: AGSGQSVMPK PMAKYVPLTI TMRSDLVNEQ GTPPQVETAN IRETKSIAYS TS

Best Arabidopsis Sequence Match ( AT3G23590.1 )
(BLAST)

0001: MVVPGRRTVW DCVIELTKMA QENCVDPRLW ASQLSSNLKF FAVELPSTEL AEVIVSYICW DNNVPIVWKF LERAMALKLV SPLVVLALLA DRVVPTRSTQ
0101: QAAYRIYLEL LKRNMFTIKD HISGPHYQKV MISVSNILRL SELFDLDTSK PGVLLVEFVF KMVSQLLDAA LSDEGLLELS QDSSSQWLVK SQDMEIDAPE
0201: RYNEKTGSLE KLQSLNTIMA IELIAEFLRN TVIARLLYLV SSNRASKWHE FVQKVQLLGE NSSALKHSKV LNSGDLLQLI SNRRFGYSYD SKVTSARKSN
0301: AIVDFGSLSS YAGLCHGASL SSLWLPLDLV FEDAMDGYQV NPTSAIEIIT GLAKTLKEIN GSTWHDTFLG LWIAALRLVQ RERDPIEGPI PRLDTRLCMS
0401: LCIVPLVVAN LIEEGKYESV MEKLRDDLVT SLQVLGDFPG LLAPPKCVVS AANKAATKAI LFLSGGNVGK SCFDVINMKD MPVNCSGNMR HLIVEACIAR
0501: NILDMSAYSW PGYVNGRINQ IPQSLPNEVP CWSSFVKGAP LNAAMVNTLV SVPASSLAEL EKLFEVAVKG SDDEKISAAT VLCGASLTRG WNIQEHTVEY
0601: LTRLLSPPVP ADYSRAENHL IGYACMLNVV IVGIGSVDSI QIFSLHGMVP QLACSLMPIC EEFGSYTPSV SWTLPSGEAI SAYSVFSNAF TLLLKLWRFN
0701: HPPIEHGVGD VPTVGSQLTP EHLLSVRNSY LVSSEILDRD RNRKRLSEVA RAASCQPVFV DSFPKLKVWY RQHQRCIAAT LSGLTHGSPV HQTVEALLNM
0801: TFGKVRGSQT LNPVNSGTSS SSGAASEDSN IRPEFPAWDI LKAVPYVVDA ALTACTHGRL SPRQLATGLK DLADFLPASL ATIVSYFSAE VSRGVWKPVF
0901: MNGVDWPSPA TNLSTVEEYI TKILATTGVD IPSLAPGGSS PATLPLPLAA FVSLTITYKI DKASERFLNL AGPALECLAA GCPWPCMPIV ASLWTQKAKR
1001: WFDFLVFSAS RTVFLHNQDA VIQLLRNCFS ATLGLNAAPM SNDGGVGALL GHGFGSHFYG GISPVAPGIL YLRMYRALRD TVSVSEEILS LLIHSVEDIA
1101: QNRLSKEKLE KLKTVKNGSR YGQSSLATAM TQVKLAASLS ASLVWLTGGL GVVHVLIKET IPSWFLSTDK SDREQGPSDL VAELRGHALA YFVVLCGALT
1201: WGVDSRSSAS KRRRQAILGS HLEFIASALD GKISVGCETA TWRTYISGLV SLMVSCLPLW VTEIDTEVLK SLSNGLRKWG KDELAIVLLS LGGLKTMDYA
1301: ADFIIHLRS

Arabidopsis Description

MED33AMediator of RNA polymerase II transcription subunit 33A [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.