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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000475.1-P
Bra000943.1-P
Bra005398.1-P
Bra005797.1-P
Bra009480.1-P
Bra018397.1-P
Bra021926.1-P
Bra025315.1-P
Bra033264.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G51180.1 Bra033264.1-P AT1G01440.1 21798944
AT3G51180.1 Bra000475.1-P AT2G29400.1 21798944
AT3G51180.1 Bra018397.1-P AT2G29400.1 21798944
AT3G51180.1 Bra005398.1-P AT2G34710.1 21798944
AT3G51180.1 Bra021926.1-P AT2G34710.1 21798944
AT3G51180.1 Bra025315.1-P AT3G27960.1 21798944
AT3G51180.1 Bra000943.1-P AT4G01090.1 21798944
AT3G51180.1 Bra037384.1-P AT4G01090.1 21798944
AT3G51180.1 Bra005797.1-P AT5G04170.1 21798944
AT3G51180.1 Bra009480.1-P AT5G04170.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX73744 Canola mitochondrion, nucleus 83.47 82.97
AT3G51180.1 Thale cress nucleus 57.06 54.32
Bra012068.1-P Field mustard cytosol 16.94 46.67
Solyc02g084080.1.1 Tomato cytosol 7.66 30.65
Solyc02g038790.1.1 Tomato cytosol 10.48 25.87
Bra025776.1-P Field mustard extracellular 20.77 25.69
Solyc02g084160.1.1 Tomato cytosol 8.06 25.16
KRH28783 Soybean nucleus 17.34 24.64
KRH28782 Soybean cytosol, nucleus, plastid 24.4 24.54
Bra016491.1-P Field mustard nucleus 19.35 24.18
EES13033 Sorghum mitochondrion 19.96 22.0
KRH69800 Soybean plastid 24.6 21.98
GSMUA_Achr1P19920_001 Banana cytosol 19.76 21.97
KRH76672 Soybean nucleus 16.94 21.59
Zm00001d001952_P001 Maize mitochondrion 19.35 21.24
KRH69802 Soybean mitochondrion 23.99 20.91
GSMUA_Achr3P11230_001 Banana cytosol 19.35 20.73
HORVU2Hr1G109820.1 Barley mitochondrion 20.97 19.7
Os04t0663200-01 Rice cytosol 15.52 19.59
TraesCS2B01G520300.1 Wheat mitochondrion 20.97 19.44
TraesCS2A01G492200.1 Wheat mitochondrion 20.97 18.74
TraesCS2D01G492400.1 Wheat mitochondrion 20.77 18.59
Zm00001d026536_P002 Maize nucleus 17.74 18.41
Solyc02g084110.1.1 Tomato cytosol 5.24 17.11
HORVU2Hr1G109740.2 Barley plastid 21.17 16.99
VIT_04s0023g03180.t01 Wine grape cytosol 23.79 16.57
PGSC0003DMT400009146 Potato nucleus 19.76 16.2
Solyc02g084200.1.1 Tomato nucleus 19.35 16.16
PGSC0003DMT400092162 Potato nucleus 17.34 15.33
PGSC0003DMT400009142 Potato plasma membrane 15.93 14.63
Protein Annotations
EnsemblPlants:Bra036832.1EnsemblPlants:Bra036832.1-PEnsemblPlantsGene:Bra036832PANTHER:PTHR33400PANTHER:PTHR33400:SF2SEG:seg
UniParc:UPI0002542C66UniProt:M4F6X2MapMan:15.5.16:::
Description
AT3G51180 (E=3e-160) | zinc finger (CCCH-type) family protein
Coordinates
chrA09:+:25551878..25553545
Molecular Weight (calculated)
55155.8 Da
IEP (calculated)
10.265
GRAVY (calculated)
-0.809
Length
496 amino acids
Sequence
(BLAST)
001: MFRTEDCPAK VASQPQRLNY PKQSPGRRQV PDLPPGFEGN HYAEKISVST IPRIKWKRPA KFIVSGAWLM GDGGESTERR TENLRISKVL EALYPHRSTI
101: PSRPSVSPVV GAESFDDSKT PTIRLTPIED ESESSEESSN TTANKQNPLE TKPQCAIQEL VSGPAPELSL AAASAALATL MKTKEQGSMI DPDLLIKLLS
201: DPKMIKNLIT DTTGKSSAPK NQPLETNTIN PTRLVPEHAT ALPMTKPQPT IIPQKQGFTA SQPVTNPEQR RVSPPKTEQR RVSPPKPEQR RVSPPKPVNQ
301: NISPLNQINR NPVSIPMSVQ PCVTQPSLPA RIPSSSLPMN VNPHQRPPRV FSEPKVTMNP PHHNPAYRTP EMNIVQAPVG FGRGPQTGFN NYPMNLNRTG
401: KPVVQPMKSD DYFKNLIREH GTVNHETNQY HSQNGKFNGR FDQNKVQKQC MYYGTARGCQ MGDRCVCLHD RLRPNFEAEA PGAKRLKFGS YDRNGF
Best Arabidopsis Sequence Match ( AT3G51180.1 )
(BLAST)
001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F
Arabidopsis Description
Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.