Factsheet for Bra025776.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29391	Canola	extracellular	98.75	98.75
Bra016491.1-P	Field mustard	nucleus	65.84	66.5
AT1G19860.2	Thale cress	nucleus	63.09	60.96
KRH61063	Soybean	nucleus	41.15	38.37
VIT_18s0001g13880.t01	Wine grape	nucleus	43.14	37.86
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	37.66	37.1
PGSC0003DMT400075650	Potato	nucleus	40.4	33.13
Solyc12g089260.1.1	Tomato	nucleus	40.15	32.99
GSMUA_Achr1P19920_001	Banana	cytosol	36.66	32.96
EES13033	Sorghum	mitochondrion	35.41	31.56
GSMUA_Achr3P11230_001	Banana	cytosol	36.41	31.53
Zm00001d001952_P001	Maize	mitochondrion	35.16	31.19
Bra012068.1-P	Field mustard	cytosol	13.97	31.11
Zm00001d026536_P002	Maize	nucleus	34.16	28.66
Os04t0663200-01	Rice	cytosol	27.93	28.5
HORVU2Hr1G109820.1	Barley	mitochondrion	37.16	28.22
TraesCS2B01G520300.1	Wheat	mitochondrion	36.91	27.66
TraesCS2D01G492400.1	Wheat	mitochondrion	37.16	26.9
TraesCS2A01G492200.1	Wheat	mitochondrion	36.91	26.67
HORVU2Hr1G109740.2	Barley	plastid	36.66	23.79
Bra036832.1-P	Field mustard	nucleus	25.69	20.77

Protein Annotations

EnsemblPlants:Bra025776.1	EnsemblPlants:Bra025776.1-P	EnsemblPlantsGene:Bra025776	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFAM:PF00642
PFscan:PS50103	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF90229	UniParc:UPI000253EEE3	UniProt:M4EAG8
MapMan:15.5.16	:	:	:	:	:

Description

AT1G19860 (E=2e-141) | zinc finger (CCCH-type) family protein

Coordinates

chrA06:-:7917492..7919137

Molecular Weight (calculated)

43122.3 Da

IEP (calculated)

4.885

GRAVY (calculated)

-0.524

Length

401 amino acids

Sequence
(BLAST)

001: MLFFGVLSFL FEVRLFISED SPSQVGSESQ DHFQAKSSGA SHLSDDNLPP GFGGMLSPNE SQIKLSDIPV IKWNCSNRTL LDDEWRMVAG NESKEAEAQN
101: QRELRVLEAF YPGASSIPPN PSVPADVDTS DYDDQQTLVI PILVVEDDDV ATDTASELPT QSGVDVPSIT NETTSTSSSL PAASEIMAAL SALSNSKEQG
201: GSMIDKDLLI KILSNPKMVE NLVTNCGSSA GSVSSNASHE AKGVVATATT PACSNGQYNP QPAVAHIPPP MVYLPPARSN QSNYGAPPPP AKDASYYKSL
301: IQQHGGERQE APPPPVQHLG GYRYSQPGAG GGGPNPEIVS NRPRDSKPKI MKPCMYFNTS RGCRNGANCL FQHDATAAYQ PRNINNNPEM QRAKRMRFDR
401: V

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.