Factsheet for VIT_18s0001g13880.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089260.1.1	Tomato	nucleus	52.52	49.18
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	43.76	49.14
PGSC0003DMT400075650	Potato	nucleus	52.08	48.67
KRH61063	Soybean	nucleus	44.64	47.44
CDY62587	Canola	mitochondrion, nucleus	41.36	46.32
CDX83740	Canola	nucleus	38.07	43.94
Bra016491.1-P	Field mustard	nucleus	37.86	43.58
Bra025776.1-P	Field mustard	extracellular	37.86	43.14
CDY29391	Canola	extracellular	37.86	43.14
CDY39347	Canola	mitochondrion	39.39	42.76
GSMUA_Achr1P19920_001	Banana	cytosol	40.7	41.7
AT1G19860.2	Thale cress	nucleus	37.86	41.69
EES13033	Sorghum	mitochondrion	40.48	41.11
Zm00001d001952_P001	Maize	mitochondrion	39.61	40.04
GSMUA_Achr3P11230_001	Banana	cytosol	37.64	37.15
Zm00001d026536_P002	Maize	nucleus	37.42	35.77
HORVU2Hr1G109820.1	Barley	mitochondrion	40.7	35.23
TraesCS2B01G520300.1	Wheat	mitochondrion	39.17	33.46
TraesCS2A01G492200.1	Wheat	mitochondrion	39.39	32.43
TraesCS2D01G492400.1	Wheat	mitochondrion	38.95	32.13
Os04t0663200-01	Rice	cytosol	27.35	31.81
HORVU2Hr1G109740.2	Barley	plastid	40.26	29.77
VIT_04s0023g03180.t01	Wine grape	cytosol	39.82	25.56

Protein Annotations

EntrezGene:100266138	wikigene:100266138	MapMan:15.5.16	ProteinID:CCB46017	ProteinID:CCB46017.1	UniProt:F6H069
EMBL:FN595227	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	EntrezGene:LOC100266138
wikigene:LOC100266138	PFscan:PS50103	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	TIGR:TC65353	UniParc:UPI0001985200
ArrayExpress:VIT_18s0001g13880	EnsemblPlantsGene:VIT_18s0001g13880	EnsemblPlants:VIT_18s0001g13880.t01	unigene:Vvi.6465	RefSeq:XP_002277913	RefSeq:XP_002277913.1
InterPro:Znf_CCCH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:11876078..11892231

Molecular Weight (calculated)

49614.9 Da

IEP (calculated)

6.574

GRAVY (calculated)

-0.493

Length

457 amino acids

Sequence
(BLAST)

001: MRGLQKSKRV SWPSDVNLCQ VRLFLSEDSP SQVGQVGLGA QDHLQAKTSW LLHSNGMGSD DNLPPGFEGA HPANQLKNKL SQIPLITWRC PPKFVLNFTW
101: QVVAGEESNE VEVQKQREMR VLEAVYPRPS AIPPNPSVSI DGEDMDNDDQ KILLIPIVPV EDEEAALEMS ADTVAPINIP MSSQSLLLPP GIPSASSSNA
201: PNIPNPPANE NVAAGMVPGV EPDVVAAASA AFTAVMRSNE QGNLIDHDLL IKILSNPKII ERIVTDQVVS SSNPQAVPNQ RLPPIALSDQ PPGHVSRVET
301: NIPLSAAIPS GPFYSQSNGP GPVPAPRPPP SMVGPSSSSP PVRPVTKDIN YYKSLIQQHG GERQEPQDQS QSHSQFANRP NHHVLGMNPE TVVTHPKPRD
401: SKPKIMKPCI YFHSSRGCRH GANCSYQHDA SLQQRVSSMP EVQNAKRMKM DREITGT

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.