Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62587 | Canola | mitochondrion, nucleus | 96.73 | 94.12 |
| AT1G19860.2 | Thale cress | nucleus | 72.54 | 69.4 |
| Bra025776.1-P | Field mustard | extracellular | 66.5 | 65.84 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 43.58 | 37.86 |
| KRH61063 | Soybean | nucleus | 40.05 | 36.98 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 36.27 | 35.38 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 37.78 | 33.63 |
| Solyc12g089260.1.1 | Tomato | nucleus | 40.3 | 32.79 |
| PGSC0003DMT400075650 | Potato | nucleus | 40.05 | 32.52 |
| EES13033 | Sorghum | mitochondrion | 36.78 | 32.44 |
| Zm00001d001952_P001 | Maize | mitochondrion | 36.02 | 31.64 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 35.77 | 30.67 |
| Bra012068.1-P | Field mustard | cytosol | 13.85 | 30.56 |
| Os04t0663200-01 | Rice | cytosol | 29.97 | 30.28 |
| Zm00001d026536_P002 | Maize | nucleus | 34.26 | 28.45 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 37.03 | 27.84 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 37.03 | 27.48 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 37.28 | 26.71 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 36.78 | 26.31 |
| HORVU2Hr1G109740.2 | Barley | plastid | 36.78 | 23.62 |
| Bra036832.1-P | Field mustard | nucleus | 24.18 | 19.35 |
Protein Annotations
| EnsemblPlants:Bra016491.1 | EnsemblPlants:Bra016491.1-P | EnsemblPlantsGene:Bra016491 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000571 | InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | SEG:seg |
| UniParc:UPI0002546D3B | UniProt:M4DJ14 | MapMan:15.5.16 | : | : | : |
Description
AT1G19860 (E=9e-164) | zinc finger (CCCH-type) family protein
Coordinates
chrA08:+:18701569..18703224
Molecular Weight (calculated)
42969.6 Da
IEP (calculated)
4.454
GRAVY (calculated)
-0.729
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEITGPVVR LFISEDSPSQ VGSESQDHLQ AKSHPSEDNL PPGFGGPLSA NDSQIKLSDI PVIKWKCSIR ILLDEEWRVV AGDESKEVET QNQRELRVLE
101: AFYPGASAIP PNPSVPADVD NSEYDDQQTV VIPILPVEDD DLAMDSASDL PAQSGVDVGT EPSRTDENTS VSSTLPAASE IMAALTAISN NKELGSGMID
201: QDLLMKILSN PKLVENLVAN NGGAGSVSSN ASSPYLSEAN GVVTTTPASS NGQYYPQPTV THNTPSMTYP PPAPSDHPNY GAPPARDASY YKSLIQQHGG
301: ERQEAPPPVQ QHLGYRYNPQ PGGGPNPEMV NSNNNNNQRP RDSKPKIMKP CMYFNSSRGC RNGANCLYQH DAADYQPRNP NNGNEMPSAK RMRFDRD
101: AFYPGASAIP PNPSVPADVD NSEYDDQQTV VIPILPVEDD DLAMDSASDL PAQSGVDVGT EPSRTDENTS VSSTLPAASE IMAALTAISN NKELGSGMID
201: QDLLMKILSN PKLVENLVAN NGGAGSVSSN ASSPYLSEAN GVVTTTPASS NGQYYPQPTV THNTPSMTYP PPAPSDHPNY GAPPARDASY YKSLIQQHGG
301: ERQEAPPPVQ QHLGYRYNPQ PGGGPNPEMV NSNNNNNQRP RDSKPKIMKP CMYFNSSRGC RNGANCLYQH DAADYQPRNP NNGNEMPSAK RMRFDRD
001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.