Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400009142 | Potato | plasma membrane | 72.56 | 79.81 |
| Solyc02g084080.1.1 | Tomato | cytosol | 9.43 | 45.16 |
| Solyc02g038790.1.1 | Tomato | cytosol | 13.97 | 41.29 |
| Solyc02g084160.1.1 | Tomato | cytosol | 9.6 | 35.85 |
| Bra012068.1-P | Field mustard | cytosol | 10.27 | 33.89 |
| Solyc02g084110.1.1 | Tomato | cytosol | 7.41 | 28.95 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 18.52 | 27.78 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 18.35 | 26.65 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 20.88 | 25.15 |
| KRH28783 | Soybean | nucleus | 14.31 | 24.36 |
| KRH76672 | Soybean | nucleus | 15.82 | 24.16 |
| KRH69800 | Soybean | plastid | 21.72 | 23.24 |
| AT5G66270.1 | Thale cress | cytosol | 17.51 | 23.16 |
| KRH69802 | Soybean | mitochondrion | 21.89 | 22.85 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 16.84 | 22.42 |
| Zm00001d001952_P001 | Maize | mitochondrion | 16.84 | 22.12 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 17.17 | 21.61 |
| EES13033 | Sorghum | mitochondrion | 16.33 | 21.56 |
| AT3G51180.1 | Thale cress | nucleus | 18.52 | 21.11 |
| Os04t0663200-01 | Rice | cytosol | 13.8 | 20.87 |
| CDX73744 | Canola | mitochondrion, nucleus | 17.51 | 20.84 |
| Solyc12g089260.1.1 | Tomato | nucleus | 17.0 | 20.7 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 18.18 | 20.19 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 15.66 | 20.09 |
| Zm00001d026536_P002 | Maize | nucleus | 15.99 | 19.87 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 18.52 | 19.82 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 18.35 | 19.68 |
| Bra036832.1-P | Field mustard | nucleus | 16.16 | 19.35 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 17.17 | 19.32 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 21.89 | 18.26 |
| HORVU2Hr1G109740.2 | Barley | plastid | 17.85 | 17.15 |
Protein Annotations
| EnsemblPlants:Solyc02g084200.1.1 | EnsemblPlantsGene:Solyc02g084200.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | SEG:seg | UniParc:UPI0002768A5D |
| UniProt:K4BAT6 | MapMan:15.5.16 | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:47374360..47378110
Molecular Weight (calculated)
65507.1 Da
IEP (calculated)
9.477
GRAVY (calculated)
-0.593
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSWASGPNL CQVKHYQEED FPSKVSRGSQ HLLQLLQGRL SYNFLAKWKC PPKFNLNEKW RVVAGEESKE AGDQEHREKT VLEVVFPSQS AIPPNPCTSS
101: DLDQNYDDIR TPAIRIIPIE EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN SPLSAKWPSN VQSTLPYLSR
201: CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL
301: AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL
401: TMTKPETSVN SNLVNEQRPP PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV LPNVGHSYPF SSMTSPTPLH
501: KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS
101: DLDQNYDDIR TPAIRIIPIE EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN SPLSAKWPSN VQSTLPYLSR
201: CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL
301: AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL
401: TMTKPETSVN SNLVNEQRPP PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV LPNVGHSYPF SSMTSPTPLH
501: KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.