Factsheet for Solyc02g024070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078620.1.1
Solyc02g084350.2.1
Solyc05g013540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	Solyc05g013540.1.1	AT1G24590.1	17376809
AT1G30490.1	Solyc02g078620.1.1	AT3G45610.1	21245844
AT2G34710.1	Solyc02g084350.2.1	AT2G18060.1	21245844
AT2G34710.1	Solyc02g078620.1.1	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	94.12	94.01
Solyc02g069830.2.1	Tomato	nucleus	85.43	86.34
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	85.43	86.04
KRH11775	Soybean	cytosol, nucleus, plastid	83.08	83.57
KRH36781	Soybean	cytosol, nucleus, plastid	82.84	82.75
KRH43001	Soybean	cytosol	80.38	80.57
KRH59117	Soybean	cytosol	78.97	78.78
GSMUA_Achr2P13060_001	Banana	cytosol	7.76	78.57
Bra021926.1-P	Field mustard	cytosol	75.44	76.16
GSMUA_Achr4P31660_001	Banana	cytosol	76.73	76.02
AT1G30490.1	Thale cress	nucleus	74.97	75.86
EER91178	Sorghum	nucleus	76.03	75.76
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	74.74	75.71
AT2G34710.1	Thale cress	cytosol	75.79	75.7
Zm00001d033246_P004	Maize	cytosol	75.79	75.35
Bra005398.1-P	Field mustard	cytosol	75.09	75.27
Zm00001d013699_P001	Maize	cytosol	75.68	75.23
Os03t0640800-01	Rice	plastid	75.91	75.2
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	76.15	75.17
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	76.15	75.17
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	76.03	75.06
GSMUA_Achr2P13050_001	Banana	cytosol	68.63	74.78
GSMUA_Achr7P01060_001	Banana	cytosol	75.32	74.62
GSMUA_Achr5P02420_001	Banana	cytosol	76.38	74.37
GSMUA_Achr4P28360_001	Banana	cytosol	78.14	73.89
GSMUA_Achr8P02960_001	Banana	cytosol	71.92	72.94
Os12t0612700-01	Rice	nucleus	72.86	72.51
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	71.8	72.22
EES17386	Sorghum	mitochondrion	69.92	69.43
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.68	69.08
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	71.33	69.06
HORVU5Hr1G010650.1	Barley	cytosol	69.57	69.0
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	67.8	68.61
HORVU0Hr1G010250.3	Barley	cytosol	59.22	67.65
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	68.74	67.63
Solyc08g066500.2.1	Tomato	cytosol	65.45	67.35
Solyc03g120910.2.1	Tomato	cytosol	64.75	65.91
Solyc12g044410.1.1	Tomato	nucleus	63.57	64.64
HORVU5Hr1G093150.2	Barley	cytosol, plastid	75.79	64.31
Zm00001d031061_P007	Maize	mitochondrion	66.86	63.65
Solyc01g057960.1.1	Tomato	plastid	9.17	56.52
Zm00001d018824_P001	Maize	cytosol	7.87	48.91
CDX71242	Canola	peroxisome	4.47	45.24
AT5G32670.1	Thale cress	cytosol, plastid	9.87	43.75
CDY53980	Canola	cytosol, nucleus, peroxisome	7.4	40.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:K4B555	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc02g024070.2	EnsemblPlants:Solyc02g024070.2.1	UniParc:UPI0002768BC5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:24919618..24925918

Molecular Weight (calculated)

93084.1 Da

IEP (calculated)

5.493

GRAVY (calculated)

-0.144

Length

851 amino acids

Sequence
(BLAST)

001: MALCLQRGEG ESGSKNDMDN GKYVRYTPEQ VEALERVYAE CPKPTSLRRQ QLIRESPILS NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL
101: LMEENDRLQK QVSQLVYENG YMKQQINTVS STTTDTSCES VVVSGQQQRK NPTPQHPERD ANNPAGLLAI AEETLAEFLG KATGTAVDWV QLIGMKPGPD
201: SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDCPSWY RDCRCLNVLS VIPTGNGGTI ELIYLQTYAP TTLATARDFW TLRYTTSLED GSLVICERSL
301: TTATGGPTGP PATSFVRAEM LPSGYLIRPC EGGGSMIHIV DHIDLDAWSV PEVLRPLYES SKILAQKTTM AALRHIRQIA QETSGEIQYS GGRQPAVLRA
401: LSQRLCRGFN DAVNGFVDDG WTITDSDGVE DVTIAINSSS SKFLGSQYNT LSILPTFGGV LCARASMLLQ NVPPALLVRF LREHRSEWAD YGVDAYSSAS
501: LKASPYAVPC ARPGGFPSSQ VILPLAQTVE HEEFLEVVRL EGPAFSPEDI ALSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFGDDAP LLPSGFRVIP
601: LEPKSDVPAA TRTLDLASTL EAGTGGSGTR PAGEIEAGNY NHRSVLTISF QFTFESHYQD NVAAMARQYV RSIVGSVQRV AMAIAPSRLS SQLTPKSFPV
701: SPEAVTLARW ISRSYRVNTG GDLFQVDSQA GDAVLKQLWH HSDAIMCCSV KMNASAVFTF ANQAGLDMLE TTLLALQDIM LDKILDEAGR KVLLSEFSKI
801: MQQGFAYLPA GICVSSMGRP ISYEQAIAWK VLNDDDSNHC LAFMFINWSF V

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.