CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99434
KRH20417
KRH28776
KRH45585
KRH50082
KRH69639
KRH74517
KRH76680

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	KRG99434	AT1G24590.1	17376809
AT1G30490.1	KRH45585	AT1G24590.1	17376809
AT1G30490.1	KRH69639	AT1G24590.1	17376809
AT1G30490.1	KRH74517	AT1G24590.1	17376809
AT1G30490.1	KRH20417	AT3G45610.1	21245844
AT1G30490.1	KRH50082	AT3G45610.1	21245844
AT2G34710.1	KRH28776	AT2G18060.1	21245844
AT2G34710.1	KRH76680	AT2G18060.1	21245844
AT2G34710.1	KRH20417	AT3G45610.1	21245844
AT2G34710.1	KRH50082	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11775	Soybean	cytosol, nucleus, plastid	94.37	95.04
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	86.39	87.1
KRH43001	Soybean	cytosol	84.74	85.04
KRH59117	Soybean	cytosol	84.86	84.76
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	84.04	84.04
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	82.75	82.84
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	79.34	80.96
Solyc02g069830.2.1	Tomato	nucleus	79.46	80.4
EER91178	Sorghum	nucleus	77.7	77.52
Zm00001d033246_P004	Maize	cytosol	77.82	77.45
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	78.17	77.26
AT2G34710.1	Thale cress	cytosol	77.23	77.23
Bra021926.1-P	Field mustard	cytosol	76.41	77.22
Zm00001d013699_P001	Maize	cytosol	77.58	77.22
AT1G30490.1	Thale cress	nucleus	76.06	77.05
Bra005398.1-P	Field mustard	cytosol	76.76	77.03
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	77.93	77.03
Os03t0640800-01	Rice	plastid	77.58	76.95
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	77.7	76.8
GSMUA_Achr4P31660_001	Banana	cytosol	77.23	76.6
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	75.47	76.55
GSMUA_Achr7P01060_001	Banana	cytosol	76.41	75.79
GSMUA_Achr5P02420_001	Banana	cytosol	77.7	75.74
GSMUA_Achr2P13050_001	Banana	cytosol	68.78	75.03
GSMUA_Achr2P13060_001	Banana	cytosol	7.39	75.0
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	74.41	74.94
Os12t0612700-01	Rice	nucleus	74.77	74.5
GSMUA_Achr8P02960_001	Banana	cytosol	73.24	74.37
GSMUA_Achr4P28360_001	Banana	cytosol	77.93	73.78
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	74.3	71.69
HORVU5Hr1G010650.1	Barley	cytosol	72.18	71.68
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	73.83	71.56
EES17386	Sorghum	mitochondrion	71.36	70.95
KRH25015	Soybean	cytosol, nucleus, plastid	69.72	70.63
HORVU0Hr1G010250.3	Barley	cytosol	61.74	70.6
KRH29910	Soybean	cytosol, nucleus, plastid	69.6	70.43
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	70.42	69.36
KRH58026	Soybean	cytosol	19.01	68.94
KRH47223	Soybean	nucleus	66.43	67.54
KRH44288	Soybean	nucleus	66.43	67.54
KRH33388	Soybean	cytosol	8.22	67.31
KRH47225	Soybean	cytosol	66.2	67.06
KRH62081	Soybean	cytosol	66.08	66.71
KRH52763	Soybean	cytosol	65.96	66.51
HORVU5Hr1G093150.2	Barley	cytosol, plastid	77.46	65.8
Zm00001d031061_P007	Maize	mitochondrion	68.66	65.44
KRH44292	Soybean	cytosol	65.02	65.18
Zm00001d018824_P001	Maize	cytosol	8.45	52.55
CDX71242	Canola	peroxisome	5.05	51.19
AT5G32670.1	Thale cress	cytosol, plastid	9.74	43.23
CDY53980	Canola	cytosol, nucleus, peroxisome	7.51	41.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100779499	MapMan:15.5.3.2	Gene3D:3.30.530.20	EMBL:ACUP02005397	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G023600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:K7LBF5	EnsemblPlants:KRH36781	ProteinID:KRH36781
ProteinID:KRH36781.1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000295D735	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:1916764..1922082

Molecular Weight (calculated)

93480.6 Da

IEP (calculated)

6.213

GRAVY (calculated)

-0.133

Length

852 amino acids

Sequence
(BLAST)

001: MALSMHKDSA NNQMDSSKYV RYTPEQVEAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE
101: NDRLQKQVSH LVYENGYMKQ QIHTASAGTT TDNSCESVVM SGQNQQQNPT PQHPNRDANN PAGLLAIAEE TLAEFLSKAT GTAVDWVQMI GMKPGPDSIG
201: IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDRQSWYRDC RCVDVLSIVP TGNGGTIELL YMQTYAPTTL AAARDFWTLR YTTSLEDGSL VICERSLTSS
301: TGGPTGPPST TFVRAEMLPS GFLVRPCEGG GSIIHIVDHI DLDVWSVPEV LRPLYESSKF LAQKLTIAAL QHIRQIAQES SGEIQYSGGR QPAVLRTFSQ
401: RLCRGFNDAV NGFVDDGWSL MGTDGVEDVT IAINSSPNKF LGSNYNASMF PAFGGGVLCA KASMLLQNVP PALLVRFLRE HRSEWADYGV DAYSAACLKA
501: SPYAVPCARP GGFPSTQVIL PLAHTIEHEE FLEVVRIEGH AFSPEDVALA RDMYLLQLCS GVDENAIGAC AQLVFAPIDE SFADDALLLP SGFRVIPLDP
601: KSDGPAATRT LDLASTMEVG SGNARPAGEA DLNGYNLRSV LTIAFQFTFE NHTRDNVAAM ARQYVRSVVG SVQRVAMAIA PSRFNTQLGP KSLSGSPEAL
701: TLARWICRSY RVHTGTELFK AESTAGDAIL KQLWHHPDAI ICCSVKTNAS PVFTFSNQAG LDMLETTLVS LQDIMLDKVL DESGRKILCS EFSKIMQQFS
801: VSFQGFASLP AGICVSSMNR PVSYEQVVAW KVLNDDDSNH CLAFMFINWS FV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.