Factsheet for PGSC0003DMT400054421

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008830
PGSC0003DMT400009136
PGSC0003DMT400011492
PGSC0003DMT400047887
PGSC0003DMT400058729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	PGSC0003DMT400008830	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400011492	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400047887	AT1G24590.1	17376809
AT1G30490.1	PGSC0003DMT400058729	AT3G45610.1	21245844
AT2G34710.1	PGSC0003DMT400009136	AT2G18060.1	21245844
AT2G34710.1	PGSC0003DMT400058729	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069830.2.1	Tomato	nucleus	97.37	96.56
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	86.95	85.21
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	82.28	81.3
GSMUA_Achr2P13060_001	Banana	cytosol	8.02	79.76
KRH11775	Soybean	cytosol, nucleus, plastid	80.72	79.67
KRH36781	Soybean	cytosol, nucleus, plastid	80.96	79.34
KRH43001	Soybean	cytosol	77.01	75.74
KRH59117	Soybean	cytosol	76.17	74.56
EER91178	Sorghum	nucleus	75.57	73.89
GSMUA_Achr4P31660_001	Banana	cytosol	75.81	73.69
Bra021926.1-P	Field mustard	cytosol	74.25	73.55
Zm00001d013699_P001	Maize	cytosol	75.33	73.48
Zm00001d033246_P004	Maize	cytosol	75.33	73.48
Os03t0640800-01	Rice	plastid	75.33	73.22
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	75.57	73.2
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	75.45	73.09
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	75.45	73.09
AT2G34710.1	Thale cress	cytosol	74.49	73.0
Bra005398.1-P	Field mustard	cytosol	74.13	72.91
AT1G30490.1	Thale cress	nucleus	73.29	72.77
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	72.93	72.5
GSMUA_Achr7P01060_001	Banana	cytosol	74.13	72.06
GSMUA_Achr5P02420_001	Banana	cytosol	75.21	71.85
GSMUA_Achr2P13050_001	Banana	cytosol	67.07	71.7
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	71.38	70.45
GSMUA_Achr4P28360_001	Banana	cytosol	75.93	70.44
Os12t0612700-01	Rice	nucleus	72.1	70.41
GSMUA_Achr8P02960_001	Banana	cytosol	70.66	70.32
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.5	67.61
HORVU5Hr1G010650.1	Barley	cytosol	69.46	67.6
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	70.78	67.24
PGSC0003DMT400074932	Potato	nucleus	42.4	67.05
EES17386	Sorghum	mitochondrion	68.62	66.86
HORVU0Hr1G010250.3	Barley	cytosol	59.4	66.58
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	66.11	65.64
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	67.54	65.2
PGSC0003DMT400074934	Potato	cytosol	64.91	64.6
PGSC0003DMT400006735	Potato	cytosol	63.95	63.95
HORVU5Hr1G093150.2	Barley	cytosol, plastid	75.33	62.71
Zm00001d031061_P007	Maize	mitochondrion	66.71	62.3
PGSC0003DMT400068037	Potato	cytosol	62.28	62.13
Zm00001d018824_P001	Maize	cytosol	8.14	49.63
CDX71242	Canola	peroxisome	4.67	46.43
AT5G32670.1	Thale cress	cytosol, plastid	10.06	43.75
CDY53980	Canola	cytosol, nucleus, peroxisome	7.31	39.35

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102601513	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	UniProt:M1BWB1	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
EnsemblPlantsGene:PGSC0003DMG400021125	PGSC:PGSC0003DMG400021125	EnsemblPlants:PGSC0003DMT400054421	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000296C8FC	RefSeq:XP_006353018.1	RefSeq:XP_006353019.1	SEG:seg	:

Description

PHAVOLUTA-like HD-ZIPIII protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021125]

Coordinates

chr2:-:28973416..28981125

Molecular Weight (calculated)

92002.1 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.128

Length

835 amino acids

Sequence
(BLAST)

001: MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY
101: DNGFMRQQLH TQVNSTTTDT CCESVVVSDQ QQQQNPIPQH HPQRDANSPA GLLAIAEETL TEFLGKATGT AVDWVQMIGM KPGPESIGIV AVSRNCNGVA
201: ARACGLVSLE PMKVAEILKD RPSWYRDCRC LDILNVIPTG NGGTIELIYL QTYAPTTLAP ARDFWTLRYT TSLEDGSLVI CERSLTSNTG GPVGPPATSS
301: VRAKMLPSGF LIRPCEGGGS IIHIVDHIDL DACSVPEVLR PLYESSKILA QKMTMAAFRY IRQIAQETSG EIQYAGGRQP AVLRAFSQRL CRGFNNAVSG
401: FIDDGWTIMG SDGVDDVTIA VNSSPSKFLD AQYNTLSILP TFGGVLCARA SMLLQDVCPA LLVRFLREHR SEWADYGVDA YSSASLKASP YAVPCARPGV
501: FPSSQVILPL AQTVEHEEFL EVVRLEGHAF SPEDIALSRD MYLLQLCSGV EENATGACAQ LVFAHIDESF GDDAPLLPSG FSVIPLEPKS DSPSAARTLD
601: LASTLEARTG GTRLAGEVEG RSYNHRSVLT IAFQFAFENH YRENVAAMAR QYVRSIVGSV QRVAMAIAPS RLCSQLTPKS FPGSPEAVTL ARWICRSYKN
701: HTGGELLQVE SQAAGDAVLK QLWHHTDSIM CCSVKMNDSA VFSFSNQAGL DMLETTLIAL QDIMLDKILD EAGRKVLLSE FPKIMQQGFA YLPAGLCVSS
801: MGRPVSYEQA VAWKVLNDDN SSHCLAFMFT NWSFI

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.