Factsheet for PGSC0003DMT400074932

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400018188
PGSC0003DMT400054750
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	PGSC0003DMT400018188	AT1G53510.1	21798944
AT4G32880.1	PGSC0003DMT400054750	AT1G53510.1	21798944
AT4G32880.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT4G32880.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT4G32880.1	PGSC0003DMT400092162	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69514	Canola	nucleus	81.82	68.57
PGSC0003DMT400074934	Potato	cytosol	98.48	61.98
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	18.18	61.94
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	18.18	61.94
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	18.18	61.94
Solyc08g066500.2.1	Tomato	cytosol	96.78	61.79
CDY45021	Canola	nucleus	82.39	58.94
CDY28273	Canola	nucleus	82.2	58.81
VIT_04s0008g03250.t01	Wine grape	cytosol	88.83	55.18
KRH52763	Soybean	cytosol	88.07	55.03
KRH62081	Soybean	cytosol	87.69	54.86
Bra011392.1-P	Field mustard	cytosol	82.58	52.34
Bra034539.1-P	Field mustard	nucleus	82.39	52.28
AT4G32880.1	Thale cress	nucleus	82.2	52.1
PGSC0003DMT400006735	Potato	cytosol	81.82	51.74
PGSC0003DMT400068037	Potato	cytosol	79.92	50.42
GSMUA_Achr8P20090_001	Banana	cytosol	79.73	50.24
GSMUA_Achr5P06550_001	Banana	cytosol	79.17	49.82
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	70.27	43.91
EES00115	Sorghum	cytosol, nucleus, plastid	70.08	43.84
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	69.7	43.19
Zm00001d008869_P001	Maize	cytosol	70.08	43.12
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	67.05	42.4
TraesCS3A01G312800.1	Wheat	nucleus	70.08	42.33
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	67.23	42.21
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	69.7	42.01
TraesCS3D01G141500.2	Wheat	nucleus	70.08	41.95
Zm00001d014252_P002	Maize	cytosol	11.36	34.48
Os01t0200300-01	Rice	cytosol, peroxisome	11.93	14.62
CDX68901	Canola	plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:M1CUD3	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG401029143	PGSC:PGSC0003DMG401029143	EnsemblPlants:PGSC0003DMT400074932
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00029519E7	SEG:seg

Description

Class III HD-Zip protein 8 [Source:PGSC_GENE;Acc:PGSC0003DMG401029143]

Coordinates

chr8:-:38729112..38732761

Molecular Weight (calculated)

58183.7 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.278

Length

528 amino acids

Sequence
(BLAST)

001: MAVTSSCKDK FGMDSGKYVR YTPEQVDALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQGVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VYENSFFRQQ TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE WVQMPGMKPG PDSIGIIAIS
201: HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS
301: MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG
401: FNEAVNGFTD EGWSMLESDG IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE WADSGIDAYS AAAVKAGPCS
501: IPVTRTGSFG GQIILPLAHT IEHEEASD

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.