CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980
CDY24091
CDY25849
CDY45117
CDY46403
CDY48959
CDY60212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	CDY24091	AT1G53510.1	21798944
AT4G32880.1	CDY25849	AT1G53510.1	21798944
AT4G32880.1	CDY45117	AT1G53510.1	21798944
AT4G32880.1	CDY60212	AT1G53510.1	21798944
AT4G32880.1	CDX73744	AT3G51180.1	21798944
AT4G32880.1	CDX77980	AT3G51180.1	21798944
AT4G32880.1	CDY46403	AT5G41070.1	21798944
AT4G32880.1	CDY48959	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28273	Canola	nucleus	99.59	99.59
CDY69514	Canola	nucleus	80.08	93.81
Bra034539.1-P	Field mustard	nucleus	99.19	87.98
AT4G32880.1	Thale cress	nucleus	96.61	85.59
PGSC0003DMT400074932	Potato	nucleus	58.94	82.39
CDY51188	Canola	nucleus	71.14	72.82
VIT_04s0008g03250.t01	Wine grape	cytosol	80.76	70.12
Solyc08g066500.2.1	Tomato	cytosol	77.91	69.53
PGSC0003DMT400074934	Potato	cytosol	78.86	69.37
KRH52763	Soybean	cytosol	79.4	69.35
KRH62081	Soybean	cytosol	79.13	69.19
CDY47819	Canola	cytosol	74.8	65.87
CDY02553	Canola	cytosol	74.53	65.87
CDY60592	Canola	cytosol	74.66	65.75
GSMUA_Achr5P06550_001	Banana	cytosol	72.76	64.0
GSMUA_Achr8P20090_001	Banana	cytosol	72.09	63.48
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.6	60.0
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.6	60.0
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.6	60.0
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	65.31	57.04
EES00115	Sorghum	cytosol, nucleus, plastid	65.18	56.99
CDY43661	Canola	cytosol	61.38	55.72
Zm00001d008869_P001	Maize	cytosol	64.63	55.59
CDY31032	Canola	cytosol	57.05	54.96
CDY31635	Canola	nucleus	62.87	54.65
CDX84286	Canola	cytosol	62.47	54.3
TraesCS3A01G312800.1	Wheat	nucleus	64.09	54.12
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	64.09	54.0
CDY09572	Canola	cytosol, nucleus, plastid	61.38	53.93
CDY02297	Canola	nucleus	61.38	53.93
TraesCS3D01G141500.2	Wheat	nucleus	64.09	53.63
CDY52706	Canola	cytosol, nucleus, plastid	61.25	53.36
CDY31519	Canola	cytosol, nucleus, plastid	60.98	52.94
CDX99164	Canola	cytosol, nucleus, plastid	59.08	51.97
CDY09191	Canola	cytosol	50.54	50.07
CDX68901	Canola	plastid	13.01	47.52
Os01t0200300-01	Rice	cytosol, peroxisome	23.31	39.91
Zm00001d014252_P002	Maize	cytosol	9.21	39.08
CDY53980	Canola	cytosol, nucleus, peroxisome	3.39	16.13
CDX82038	Canola	extracellular	2.44	11.11
CDX71242	Canola	peroxisome	0.54	4.76
CDY31031	Canola	extracellular	0.54	3.74
CDY57624	Canola	extracellular	0.41	3.23
CDY27014	Canola	cytosol, plasma membrane	0.27	2.67

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078I587	UniProt:A0A078I587	EnsemblPlants:CDY45021
ProteinID:CDY45021	ProteinID:CDY45021.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00081269001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF344	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EEA408	:	:	:

Description

BnaA08g11980DBnaA08g11980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I587]

Coordinates

chrLK032611:-:70129..75494

Molecular Weight (calculated)

81359.6 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.209

Length

738 amino acids

Sequence
(BLAST)

001: MGGGSNNSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NGNLATTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC
201: TGIAARACGL VGLDPTRVAE ILKDRPCWLR DCRSLDIVNV LSTANGGTLE LIYMQMYAPT TLAPARDFWM LRYTSVMEDG SLVICERSLN NTQNGPSMPP
301: SPHFVRAEIL PSGYLIRPCE GGGSILHIVD HFDLEPWSVP EVLRSLYESS TLLAQRTTMA ALRYLRQISQ EISQPNVSGW GRRPAALRAL SQRLSKGFNE
401: AVNGFSDEGW SMVESDGIDD VTLLVNSSPT KMMMTSSLPF SNGFTSMPSA VLCAKASMLL QNVPPSILLR FLREHRQEWA DNSIDAYSAA AIKAGPCSLP
501: VPRPGSFGGQ VILPLAHTIE NEEFMEVIKL ESLGHYQEDM MMPADVFLLQ MCSGVDENAV ESCAELIFAP IDASFSDDAP IIPSGFRIIP LDTKSEGVSP
601: NRTLDLASAL DVGSRTAGDS CGSRGNTKSV MTIAFQLAFE MHMQENVASM ARQYVRSVIA SVQRVALALS PSSHQLSGGL RPPPASPEAH TLARWISHSY
701: RCYLGVELLK PDGTDLLKSL WHHPDALMCC SLKVLCFH

Best Arabidopsis Sequence Match ( AT4G32880.1 )
(BLAST)

001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI

Arabidopsis Description

ATHB-8Homeobox-leucine zipper protein ATHB-8 [Source:UniProtKB/Swiss-Prot;Acc:Q39123]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.