Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60690.1 | CDY08392 | AT1G64620.1 | 21245844 |
| AT5G60690.1 | CDY70840 | AT1G64620.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27014 | Canola | cytosol, plasma membrane | 40.12 | 86.67 |
| CDY57624 | Canola | extracellular | 45.68 | 79.57 |
| CDY31031 | Canola | extracellular | 35.19 | 53.27 |
| CDX71242 | Canola | peroxisome | 17.9 | 34.52 |
| CDY53980 | Canola | cytosol, nucleus, peroxisome | 24.69 | 25.81 |
| CDX68901 | Canola | plastid | 30.25 | 24.26 |
| CDY09191 | Canola | cytosol | 49.38 | 10.74 |
| CDY52706 | Canola | cytosol, nucleus, plastid | 51.23 | 9.8 |
| CDY31519 | Canola | cytosol, nucleus, plastid | 51.23 | 9.76 |
| AT5G60690.1 | Thale cress | cytosol, nucleus, plastid | 50.62 | 9.74 |
| CDX99164 | Canola | cytosol, nucleus, plastid | 48.77 | 9.42 |
| KRH25015 | Soybean | cytosol, nucleus, plastid | 48.15 | 9.27 |
| KRH29910 | Soybean | cytosol, nucleus, plastid | 48.15 | 9.26 |
| VIT_06s0004g02800.t01 | Wine grape | nucleus | 46.91 | 9.0 |
| Solyc11g069470.1.1 | Tomato | cytosol, nucleus, plastid | 45.68 | 8.8 |
| PGSC0003DMT400020801 | Potato | cytosol, nucleus, plastid | 45.06 | 8.68 |
| CDY02553 | Canola | cytosol | 43.83 | 8.5 |
| Os03t0109400-02 | Rice | nucleus | 43.83 | 8.46 |
| CDY47819 | Canola | cytosol | 43.21 | 8.35 |
| CDY60592 | Canola | cytosol | 43.21 | 8.35 |
| Os10t0480200-01 | Rice | nucleus | 43.21 | 8.33 |
| Zm00001d048527_P028 | Maize | nucleus | 43.21 | 8.27 |
| GSMUA_Achr5P18530_001 | Banana | cytosol, nucleus, plastid | 42.59 | 8.27 |
| HORVU1Hr1G041790.2 | Barley | nucleus | 42.59 | 8.21 |
| OQU93425 | Sorghum | nucleus | 42.59 | 8.19 |
| EER94065 | Sorghum | nucleus | 41.98 | 8.11 |
| TraesCS1D01G155200.3 | Wheat | nucleus | 41.98 | 8.11 |
| HORVU4Hr1G090030.9 | Barley | nucleus | 41.98 | 8.11 |
| TraesCS4B01G385200.1 | Wheat | nucleus | 41.98 | 8.1 |
| TraesCS1A01G157500.1 | Wheat | nucleus | 41.98 | 8.1 |
| TraesCS1B01G173900.1 | Wheat | nucleus | 41.98 | 8.1 |
| Zm00001d032681_P004 | Maize | cytosol, nucleus, plastid | 43.21 | 8.03 |
| CDX84286 | Canola | cytosol | 41.98 | 8.01 |
| CDY31635 | Canola | nucleus | 41.98 | 8.01 |
| TraesCS5A01G549700.1 | Wheat | nucleus | 41.36 | 8.0 |
| TraesCS4D01G359600.1 | Wheat | nucleus | 41.36 | 8.0 |
| CDY43661 | Canola | cytosol | 40.12 | 8.0 |
| CDY02297 | Canola | nucleus | 40.74 | 7.86 |
| Zm00001d027317_P015 | Maize | nucleus | 41.36 | 7.85 |
| CDY09572 | Canola | cytosol, nucleus, plastid | 40.12 | 7.74 |
| Zm00001d049529_P001 | Maize | cytosol, plastid | 6.17 | 5.26 |
| CDY51188 | Canola | nucleus | 15.43 | 3.47 |
| CDY31032 | Canola | cytosol | 14.81 | 3.13 |
| HORVU5Hr1G061410.29 | Barley | cytosol | 4.94 | 2.77 |
| CDY69514 | Canola | nucleus | 9.88 | 2.54 |
| Os03t0769800-01 | Rice | plastid | 3.7 | 2.48 |
| CDY28273 | Canola | nucleus | 11.11 | 2.44 |
| CDY45021 | Canola | nucleus | 11.11 | 2.44 |
| Os10t0147300-02 | Rice | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX82038 | EnsemblPlantsGene:GSBRNA2T00137021001 | Gene3D:3.30.70.330 | GO:A0A078D459 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR012677 | InterPro:MEKHLA | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR44799 |
| PFAM:PF08670 | ProteinID:CDX82038 | ProteinID:CDX82038.1 | SUPFAM:SSF54928 | UniParc:UPI0004EDF26A | MapMan:35.1 |
Description
BnaC08g35630D
Coordinates
chrLK031826:-:1996017..1997448
Molecular Weight (calculated)
18334.9 Da
IEP (calculated)
4.156
GRAVY (calculated)
0.183
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLYTLLAD LKLMSVDMLI IDEKPQISLQ RFVFFCSQDR KSDVGTNLFI GNLDPDVDEK IVYDTFSTFG GTASNPMHQP VFMFANQAGL DMIETTLVAL
101: QDIALEKIFD ESGICMLAFR NLFVYNGGHV TYEQAITWKV SDNDNSNNLH CLAFSFVNWS FV
101: QDIALEKIFD ESGICMLAFR NLFVYNGGHV TYEQAITWKV SDNDNSNNLH CLAFSFVNWS FV
001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV
Arabidopsis Description
REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.