Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_02s0025g02250.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60690.1 | VIT_02s0025g02250.t01 | AT1G64620.1 | 21245844 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29910 | Soybean | cytosol, nucleus, plastid | 87.8 | 88.0 |
| KRH25015 | Soybean | cytosol, nucleus, plastid | 86.73 | 87.04 |
| Solyc11g069470.1.1 | Tomato | cytosol, nucleus, plastid | 85.07 | 85.37 |
| PGSC0003DMT400020801 | Potato | cytosol, nucleus, plastid | 84.72 | 85.02 |
| AT5G60690.1 | Thale cress | cytosol, nucleus, plastid | 81.28 | 81.47 |
| CDY31519 | Canola | cytosol, nucleus, plastid | 81.75 | 81.18 |
| Bra002458.1-P | Field mustard | cytosol, nucleus, plastid | 81.75 | 81.18 |
| CDY52706 | Canola | cytosol, nucleus, plastid | 81.28 | 80.99 |
| CDY09191 | Canola | cytosol | 70.14 | 79.46 |
| Bra020236.1-P | Field mustard | nucleus | 78.91 | 78.72 |
| Bra038295.1-P | Field mustard | cytosol, nucleus, plastid | 76.07 | 77.07 |
| CDX99164 | Canola | cytosol, nucleus, plastid | 76.54 | 77.0 |
| HORVU5Hr1G061410.29 | Barley | cytosol | 25.47 | 74.39 |
| GSMUA_Achr5P18530_001 | Banana | cytosol, nucleus, plastid | 72.51 | 73.38 |
| CDY31032 | Canola | cytosol | 66.59 | 73.37 |
| Os10t0480200-01 | Rice | nucleus | 72.87 | 73.21 |
| VIT_13s0019g04320.t01 | Wine grape | nucleus | 72.75 | 73.01 |
| VIT_10s0003g04670.t01 | Wine grape | cytosol, nucleus, plastid | 72.87 | 72.78 |
| HORVU1Hr1G041790.2 | Barley | nucleus | 71.8 | 72.14 |
| Os03t0109400-02 | Rice | nucleus | 71.68 | 72.11 |
| OQU93425 | Sorghum | nucleus | 71.92 | 72.09 |
| TraesCS1A01G157500.1 | Wheat | nucleus | 71.45 | 71.79 |
| TraesCS1B01G173900.1 | Wheat | nucleus | 71.45 | 71.79 |
| Zm00001d048527_P028 | Maize | nucleus | 71.56 | 71.39 |
| TraesCS1D01G155200.3 | Wheat | nucleus | 70.73 | 71.24 |
| EER94065 | Sorghum | nucleus | 70.5 | 71.0 |
| Zm00001d027317_P015 | Maize | nucleus | 71.45 | 70.69 |
| CDY31031 | Canola | extracellular | 8.89 | 70.09 |
| TraesCS4D01G359600.1 | Wheat | nucleus | 69.31 | 69.81 |
| HORVU4Hr1G090030.9 | Barley | nucleus | 69.19 | 69.69 |
| TraesCS5A01G549700.1 | Wheat | nucleus | 69.19 | 69.69 |
| TraesCS4B01G385200.1 | Wheat | nucleus | 69.19 | 69.61 |
| VIT_09s0002g03740.t01 | Wine grape | cytosol | 68.13 | 68.37 |
| Zm00001d032681_P004 | Maize | cytosol, nucleus, plastid | 68.01 | 65.83 |
| VIT_04s0008g03250.t01 | Wine grape | cytosol | 66.23 | 65.76 |
| CDY27014 | Canola | cytosol, plasma membrane | 5.69 | 64.0 |
| CDY57624 | Canola | extracellular | 6.87 | 62.37 |
| Zm00001d049529_P001 | Maize | cytosol, plastid | 12.2 | 54.21 |
| VIT_18s0001g00620.t01 | Wine grape | cytosol | 6.52 | 53.4 |
| CDX82038 | Canola | extracellular | 9.0 | 46.91 |
| Os03t0769800-01 | Rice | plastid | 4.62 | 16.12 |
| Os10t0147300-02 | Rice | plastid | 0.95 | 7.34 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100243208 | wikigene:100243208 | MapMan:15.5.3.2 | Gene3D:3.30.530.20 | EMBL:AM465908 |
| ProteinID:CAN61612 | ProteinID:CAN61612.1 | ProteinID:CBI16318 | ProteinID:CBI16318.3 | ncoils:Coil | UniProt:D7SKZ0 |
| EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | EntrezGene:LOC100243208 | wikigene:LOC100243208 | InterPro:MEKHLA |
| PFAM:PF00046 | PFAM:PF01852 | PFAM:PF08670 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF279 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | TIGR:TC61672 | UniParc:UPI00019835BD | ArrayExpress:VIT_06s0004g02800 | EnsemblPlantsGene:VIT_06s0004g02800 | EnsemblPlants:VIT_06s0004g02800.t01 |
| unigene:Vvi.14908 | RefSeq:XP_002285176 | RefSeq:XP_002285176.2 | RefSeq:XP_010651164.1 | RefSeq:XP_019076130.1 | : |
Description
No Description!
Coordinates
chr6:-:3508029..3516493
Molecular Weight (calculated)
92254.2 Da
IEP (calculated)
6.211
GRAVY (calculated)
-0.093
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAIAQQHR ESSSSGSINK HLDSGKYVRY TAEQVEALER VYLECPKPSS LRRQQLIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLTA
101: MNKLLMEEND RLQKQVSQLV CENGYMRQQL QTASAATTDA SCESVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT AVDWVQMPGM KPGPDSVGIF
201: AISHSCSGVA ARACGLVSLE PSKIAEILKD RPSWFRDCRS LEVFTMFPAG NGGTVELLYT QIYAPTTLAP ARDFWTLRYT TSLDNGSLVV CERSLSGSGA
301: GPNTAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSRVVA QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL
401: SRGFNDAING FNDDGWSLMS CDGAEDVIIA VNSTKNLNTT SNPANSLSLP GGVLCAKASM LLQNVPPAVL VRFLREHRSE WADFSVDAYS AASLKASPYS
501: YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLAH EDAFMSRDIH LLQICSGVDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKSGD
601: TQETLTTHRT LDLTSSLEVG PATNQAAGDS SSCYNTRSVL TIAFQFPFES NLQDNVATMA RQYVRSVISS VQRVAMAISP SGLGPAVGPK LSAGSPEALT
701: LAHWICQSYS YHVGAELLRS DSVGGDSVLK NLWHHQDAIL CCSLKSLPVL IFANQAGLDM LETTLVALQD ISLDKIFDES GRKGLCADFA KIMQQGFAYL
801: PAGICMSTMG RHVSYEQAIA WKVLAAEENT VHCLAFSFIN WSFV
101: MNKLLMEEND RLQKQVSQLV CENGYMRQQL QTASAATTDA SCESVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT AVDWVQMPGM KPGPDSVGIF
201: AISHSCSGVA ARACGLVSLE PSKIAEILKD RPSWFRDCRS LEVFTMFPAG NGGTVELLYT QIYAPTTLAP ARDFWTLRYT TSLDNGSLVV CERSLSGSGA
301: GPNTAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSRVVA QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL
401: SRGFNDAING FNDDGWSLMS CDGAEDVIIA VNSTKNLNTT SNPANSLSLP GGVLCAKASM LLQNVPPAVL VRFLREHRSE WADFSVDAYS AASLKASPYS
501: YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLAH EDAFMSRDIH LLQICSGVDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKSGD
601: TQETLTTHRT LDLTSSLEVG PATNQAAGDS SSCYNTRSVL TIAFQFPFES NLQDNVATMA RQYVRSVISS VQRVAMAISP SGLGPAVGPK LSAGSPEALT
701: LAHWICQSYS YHVGAELLRS DSVGGDSVLK NLWHHQDAIL CCSLKSLPVL IFANQAGLDM LETTLVALQD ISLDKIFDES GRKGLCADFA KIMQQGFAYL
801: PAGICMSTMG RHVSYEQAIA WKVLAAEENT VHCLAFSFIN WSFV
001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV
Arabidopsis Description
REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.