Factsheet for Bra020236.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027722.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60690.1	Bra027722.1-P	AT1G64620.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09191	Canola	cytosol	86.17	97.85
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	91.37	91.81
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	91.96	91.53
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	81.32	82.59
KRH29910	Soybean	cytosol, nucleus, plastid	79.55	79.93
KRH25015	Soybean	cytosol, nucleus, plastid	79.2	79.67
VIT_06s0004g02800.t01	Wine grape	nucleus	78.72	78.91
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	77.07	77.53
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	76.36	76.81
HORVU5Hr1G061410.29	Barley	cytosol	23.88	69.9
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	67.85	68.82
Os10t0480200-01	Rice	nucleus	67.49	67.98
HORVU1Hr1G041790.2	Barley	nucleus	67.14	67.62
TraesCS1A01G157500.1	Wheat	nucleus	67.02	67.5
TraesCS1B01G173900.1	Wheat	nucleus	67.02	67.5
EER94065	Sorghum	nucleus	66.55	67.18
Os03t0109400-02	Rice	nucleus	66.55	67.1
TraesCS1D01G155200.3	Wheat	nucleus	66.43	67.06
Zm00001d048527_P028	Maize	nucleus	66.67	66.67
OQU93425	Sorghum	nucleus	66.31	66.63
Zm00001d027317_P015	Maize	nucleus	66.19	65.65
TraesCS4D01G359600.1	Wheat	nucleus	65.01	65.63
HORVU4Hr1G090030.9	Barley	nucleus	64.66	65.27
TraesCS5A01G549700.1	Wheat	nucleus	64.66	65.27
TraesCS4B01G385200.1	Wheat	nucleus	64.66	65.2
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	63.83	64.29
Bra021926.1-P	Field mustard	cytosol	63.83	64.06
Bra005398.1-P	Field mustard	cytosol	63.71	63.49
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	65.01	63.07
Bra014315.1-P	Field mustard	cytosol	61.11	61.99
Bra018948.1-P	Field mustard	cytosol	61.11	61.69
Bra034539.1-P	Field mustard	nucleus	59.81	60.82
Bra011392.1-P	Field mustard	cytosol	59.57	60.5
Bra030088.1-P	Field mustard	mitochondrion	7.8	54.1
Zm00001d049529_P001	Maize	cytosol, plastid	10.64	47.37
Os03t0769800-01	Rice	plastid	4.85	16.94
Os10t0147300-02	Rice	plastid	0.83	6.42

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra020236	EnsemblPlants:Bra020236.1	EnsemblPlants:Bra020236.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4DUP3	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF279
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0002543577	SEG:seg	:	:	:	:

Description

AT5G60690 (E=0.0) REV, IFL, IFL1 | REV (REVOLUTA); DNA binding / lipid binding / transcription factor

Coordinates

chrA02:-:5734450..5738525

Molecular Weight (calculated)

92976.8 Da

IEP (calculated)

5.811

GRAVY (calculated)

-0.122

Length

846 amino acids

Sequence
(BLAST)

001: MEMMEVANHG ERSTSDSMNR HLDSNGKYVR YTSEQVEALE RVYSECPKPS SLRRQQLIRE CSILANIEPK QIKVWFQNRR CRDKQRKEAS RLQSVNRKLS
101: AMNKLLMEEN DRLQKQVSQL VCENGYMKQQ LTTVVNDVSC DSVVTTPQHS LRDANSHAGL ISIAEETLAE FLSKATGTAV DWVQMPGMKP GPDSVGIFAI
201: SQRCSGVAAR ACGLVSLEPL KIAEILKDRP SWYRECRSLE VYTMFPAGNG GTIELVYMQT YAPTTLAPAR DFWTLRYTTS LDNGSYVVCE RSLSGSGAGP
301: SPASASQFVR AEMLSSGYLI RPCDGGGSII HIVDHLNLEA WSVPDVLRPL YESSKVVAQK MTISALRYIR QLAQESNGEL VYGLGKQPAV LRTFSQRLSR
401: GFNDAVNGFG DDGWSTMHCD GAEDIILAIN STKHLSNISS SLSFLGGVLC AKATMLLQNV PPAVLIQFLR EHRSEWADFH VDAYSAATLK AGAFAYPGVR
501: PTRFTGSQII MPLGHTIEHE EMLEVVRLEG HSLAQEDAFM SRDVHLLQIC TGIDENAVGA CSELIFAPIN EIFPDDAPLV PSGFRVIPID AKTGDAQDLI
601: TSNHRTLDLT SSLEVGPSPE TASGNSSSSC SSSRCILTIA FQFPFEPNLQ ENVAGMACQY VRSVISSVQR VAMAISPSGI SPGLGSKLSP GSPEAVTLSQ
701: WISQSYTHHF GSELVTIDSL ESNDSVLKLI WNHQDAILCC TLKPQPVFMF ANQAGLDMLE TTLVALQDIT LEKIFDESGR KALCSDFAKL MQQGFACLPS
801: GICLSTMGRH VTYEQAVAWK VFAFENDNNN NNLHCLAFSF VNWSFV

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.