Factsheet for TraesCS1A01G157500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G173900.1	Wheat	nucleus	99.64	99.64
HORVU1Hr1G041790.2	Barley	nucleus	99.4	99.4
TraesCS1D01G155200.3	Wheat	nucleus	98.93	99.16
Os10t0480200-01	Rice	nucleus	92.14	92.14
EER94065	Sorghum	nucleus	87.5	87.71
TraesCS5A01G549700.1	Wheat	nucleus	81.9	82.1
Zm00001d032681_P004	Maize	cytosol, nucleus, plastid	82.02	79.01
GSMUA_Achr5P18530_001	Banana	cytosol, nucleus, plastid	76.43	76.98
VIT_06s0004g02800.t01	Wine grape	nucleus	71.79	71.45
KRH29910	Soybean	cytosol, nucleus, plastid	71.31	71.14
KRH25015	Soybean	cytosol, nucleus, plastid	70.36	70.27
Solyc11g069470.1.1	Tomato	cytosol, nucleus, plastid	70.12	70.04
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	69.64	69.56
CDY52706	Canola	cytosol, nucleus, plastid	69.88	69.3
AT5G60690.1	Thale cress	cytosol, nucleus, plastid	69.29	69.12
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	69.52	68.71
CDY31519	Canola	cytosol, nucleus, plastid	69.52	68.71
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	66.67	67.23
CDX99164	Canola	cytosol, nucleus, plastid	67.14	67.22
Bra020236.1-P	Field mustard	nucleus	67.5	67.02
CDY09191	Canola	cytosol	59.17	66.71
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	67.98	66.24
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	64.88	64.42
VIT_13s0019g04320.t01	Wine grape	nucleus	64.4	64.33
CDY31032	Canola	cytosol	58.33	63.97
CDY27014	Canola	cytosol, plasma membrane	5.36	60.0
CDY31031	Canola	extracellular	7.38	57.94
TraesCS3A01G312800.1	Wheat	nucleus	58.45	56.18
CDY57624	Canola	extracellular	6.19	55.91
CDX82038	Canola	extracellular	8.1	41.98

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF326	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS1A01G157500	EnsemblPlants:TraesCS1A01G157500.1
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:279733261..279742276

Molecular Weight (calculated)

92046.3 Da

IEP (calculated)

5.719

GRAVY (calculated)

-0.118

Length

840 amino acids

Sequence
(BLAST)

001: MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV
101: NRKLSAMNKL LMEENERLQK QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS KATGTAVDWV PMPGMKPGPD
201: SFGIVAVSHG CRGVAARACG LVNLEPTKIV EILKDRPSWF RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL
301: SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT
401: FSQRLSRGFN DAISGFNDDG WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIAPGGVICA KASMLLQSVP PAVLVRFLRE HRSEWADYNF DAYSASALKS
501: SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ ALDEGLLSRD IHLLQFCTGI DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT
601: DGAPAGRTLD LASSLEAGST TVQASGGADD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY VRSIVSAVQR VSMAISPSRS GLNAEQKIIS GFPEAATLAR
701: WICQSYRFHL GVELFRQADE AGESLLRMLW DHEDAILCCS FKEKPVFTFA NEMGINMLET SFVALQDLSL DKIFDEAGRK ALYSEIPKLM EQGFVYLPGG
801: VCLSGMGRHV SFENAVAWKV VGEDNNVHCL AFCFVNWSFV

Best Arabidopsis Sequence Match ( AT5G60690.1 )
(BLAST)

001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV

Arabidopsis Description

REVHomeobox-leucine zipper protein REVOLUTA [Source:UniProtKB/Swiss-Prot;Acc:Q9SE43]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.