Factsheet for TraesCS3A01G312800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1
TraesCS5A01G290100.2
TraesCS5B01G289100.1
TraesCS5D01G297600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS2D01G492400.1	AT3G51180.1	21798944
AT4G32880.1	TraesCS5A01G290100.2	AT5G41070.1	21798944
AT4G32880.1	TraesCS5B01G289100.1	AT5G41070.1	21798944
AT4G32880.1	TraesCS5D01G297600.2	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	92.68	92.47
TraesCS3D01G141500.2	Wheat	nucleus	92.11	91.27
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	88.22	91.24
EES00115	Sorghum	cytosol, nucleus, plastid	80.21	83.06
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	14.3	80.65
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	14.3	80.65
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	14.3	80.65
Zm00001d008869_P001	Maize	cytosol	77.69	79.14
Os01t0200300-01	Rice	cytosol, peroxisome	37.76	76.57
PGSC0003DMT400074932	Potato	nucleus	42.33	70.08
Solyc08g066500.2.1	Tomato	cytosol	64.42	68.08
VIT_09s0002g03740.t01	Wine grape	cytosol	65.22	67.78
GSMUA_Achr5P06550_001	Banana	cytosol	64.87	67.58
PGSC0003DMT400006735	Potato	cytosol	64.07	67.07
Solyc03g120910.2.1	Tomato	cytosol	64.07	66.99
GSMUA_Achr8P20090_001	Banana	cytosol	64.07	66.83
PGSC0003DMT400074934	Potato	cytosol	63.62	66.27
CDY69514	Canola	nucleus	47.71	66.19
VIT_04s0008g03250.t01	Wine grape	cytosol	64.3	66.12
CDY02553	Canola	cytosol	62.81	65.75
AT1G52150.2	Thale cress	cytosol	62.93	65.71
Solyc12g044410.1.1	Tomato	nucleus	62.93	65.71
PGSC0003DMT400068037	Potato	cytosol	62.93	65.71
CDY60592	Canola	cytosol	62.93	65.63
CDY51188	Canola	nucleus	54.12	65.6
Bra014315.1-P	Field mustard	cytosol	62.47	65.47
Bra018948.1-P	Field mustard	cytosol	62.59	65.27
CDY47819	Canola	cytosol	62.59	65.27
CDY45021	Canola	nucleus	54.12	64.09
CDY28273	Canola	nucleus	54.0	63.96
AT4G32880.1	Thale cress	nucleus	60.53	63.51
Bra011392.1-P	Field mustard	cytosol	60.3	63.27
Bra034539.1-P	Field mustard	nucleus	60.18	63.22
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	57.67	58.47
TraesCS1A01G157500.1	Wheat	nucleus	56.18	58.45
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	56.06	57.92
CDX68901	Canola	plastid	13.16	56.93
TraesCS5A01G549700.1	Wheat	nucleus	54.35	56.68
Bra030088.1-P	Field mustard	mitochondrion	7.55	54.1
KRH33388	Soybean	cytosol	4.35	36.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS3A01G312800	EnsemblPlants:TraesCS3A01G312800.1
TIGR:cd00086	TIGR:cd08875	TIGR:cd14686	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:552611093..552615133

Molecular Weight (calculated)

94713.2 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.050

Length

874 amino acids

Sequence
(BLAST)

001: MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECA VLASVDPKQI KVWFQNRRCR EKQRKESGRL QSLNRKLAAM NKLLMEENDR LQKQVSHLVY
101: ENGYYRQQTH SVRPPPPPPS PATMMSPPPL LPPPRAHAFT PPPPVLPLPL QAGLATTDTS CESVVTSGQQ NGVVVVPPPP PRDASPAGLM SIAEETLTEF
201: LSKATGTAVE WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGMEPAK VAEILKDRPL WLRDCRSMEV VNVLPAGSNG TIELLYMQLY APTTLAPARD
301: FWLMRYTSIL DDGSLVVCER SLSTKQGGPS MPLVQPFVRG EMLPSGFLIR PSDGGGSVIH IVDHLDLEPW SVPEVVRPLY ESSAMVAQKM SMAALRYLRQ
401: VAHEDTHSVI TGWGRQPAAL RALSQKLTRG FNETLGGLAD DGWSVIESDG VDDVCISVNS SPSKLMSCNA TFNDGLPMVS TGVLCAKASM LLQDVSPPSL
501: LRFLREHRSQ WADSSLDAFF ASALKPNFCN LPMSRLGGFS GQVILPLAHT FDPEEFLEVI KIGNASNYQD TLMHRDLFLL QMYNGIDENP MGTCSELIFA
601: PIDASFSDDS PLLPSGFRII PIDSPLDTSS PNCTLDLAST LEAGTPGSRI AGHSRSGSKA VMTIAFQFAF ESHLQDSVAA MARQYMRSII SSVQRIALAL
701: SSSHLVPHGS SRLLPPVTPE AATLSRWIVQ SYRFHFGAEL IKAADAGSGE SALKALWHHT SAILCCSLKA MPVLTFANQS GLDMLETTLA ALREMTMDKV
801: LDCDQGRKGL LCADLMASVA EQGYACVEGG TCASSMGRPA SYGKAVAWKV LDDGGAGAGG AHCVCFAFMD WSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.