Factsheet for Bra011392.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025523.1-P
Bra036832.1-P
Bra038128.1-P
Bra039676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	Bra038128.1-P	AT1G53510.1	21798944
AT4G32880.1	Bra039676.1-P	AT1G53510.1	21798944
AT4G32880.1	Bra036832.1-P	AT3G51180.1	21798944
AT4G32880.1	Bra025523.1-P	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034539.1-P	Field mustard	nucleus	97.72	97.84
AT4G32880.1	Thale cress	nucleus	97.0	97.0
CDX68901	Canola	plastid	23.41	96.53
PGSC0003DMT400074932	Potato	nucleus	52.34	82.58
KRH52763	Soybean	cytosol	80.07	78.93
KRH62081	Soybean	cytosol	79.95	78.91
Solyc08g066500.2.1	Tomato	cytosol	78.27	78.84
VIT_04s0008g03250.t01	Wine grape	cytosol	80.43	78.82
PGSC0003DMT400074934	Potato	cytosol	78.99	78.43
Bra014315.1-P	Field mustard	cytosol	75.27	75.18
Bra018948.1-P	Field mustard	cytosol	75.03	74.58
GSMUA_Achr5P06550_001	Banana	cytosol	72.15	71.63
GSMUA_Achr8P20090_001	Banana	cytosol	71.79	71.36
EES00115	Sorghum	cytosol, nucleus, plastid	65.67	64.81
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	64.23	63.31
Zm00001d008869_P001	Maize	cytosol	64.95	63.05
Bra021926.1-P	Field mustard	cytosol	63.27	62.51
Bra005398.1-P	Field mustard	cytosol	62.67	61.48
Bra030088.1-P	Field mustard	mitochondrion	9.0	61.48
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	61.34	60.83
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	11.28	60.65
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	11.28	60.65
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	11.28	60.65
TraesCS3A01G312800.1	Wheat	nucleus	63.27	60.3
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	61.46	60.24
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	63.27	60.16
TraesCS3D01G141500.2	Wheat	nucleus	63.27	59.75
Bra020236.1-P	Field mustard	nucleus	60.5	59.57
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	59.18	59.18
Os01t0200300-01	Rice	cytosol, peroxisome	28.45	54.99
Zm00001d014252_P002	Maize	cytosol	8.76	41.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra011392	EnsemblPlants:Bra011392.1	EnsemblPlants:Bra011392.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4D4I8	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0002546075	:	:	:	:	:

Description

AT4G32880 (E=0.0) ATHB-8, ATHB8 | ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor

Coordinates

chrA01:+:2375068..2379500

Molecular Weight (calculated)

91943.4 Da

IEP (calculated)

6.182

GRAVY (calculated)

-0.182

Length

833 amino acids

Sequence
(BLAST)

001: MGGGSNSSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPSWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHLDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVSG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSMLESDGID DVTLLVNSSP TKMMMTSSLP FSNGFTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDIGSRTAGD SCGSRGNTKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGG LRPPPASPEA HTLARWISHS
701: YRCYLGVELL KPNGNDLLKS LWHHPDALMC CSLKALPPVF TFANQAGLDM LETTLVALQD ITLEKIFDNN GKKTFCSDFP QIMQQGFMCT DGGICMSSMG
801: RAVTYEKAVA WKVLNDDEDP HCICFMFLNW SFI

Best Arabidopsis Sequence Match ( AT4G32880.1 )
(BLAST)

001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI

Arabidopsis Description

ATHB-8Homeobox-leucine zipper protein ATHB-8 [Source:UniProtKB/Swiss-Prot;Acc:Q39123]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.