Factsheet for Bra030088.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014252_P002	Maize	cytosol	33.61	23.56
KRH58026	Soybean	cytosol	22.13	11.49
Bra014315.1-P	Field mustard	cytosol	72.95	10.67
AT1G52150.2	Thale cress	cytosol	72.95	10.63
Bra018948.1-P	Field mustard	cytosol	72.13	10.5
VIT_09s0002g03740.t01	Wine grape	cytosol	65.57	9.51
KRH44288	Soybean	nucleus	63.93	9.31
Bra034539.1-P	Field mustard	nucleus	63.11	9.25
KRH47223	Soybean	nucleus	63.11	9.19
KRH44292	Soybean	cytosol	63.11	9.06
KRH47225	Soybean	cytosol	62.3	9.04
Bra011392.1-P	Field mustard	cytosol	61.48	9.0
GSMUA_Achr5P06550_001	Banana	cytosol	61.48	8.94
Solyc12g044410.1.1	Tomato	nucleus	59.84	8.72
PGSC0003DMT400068037	Potato	cytosol	59.84	8.72
GSMUA_Achr8P20090_001	Banana	cytosol	59.84	8.71
PGSC0003DMT400006735	Potato	cytosol	58.2	8.5
Solyc03g120910.2.1	Tomato	cytosol	58.2	8.49
EES00115	Sorghum	cytosol, nucleus, plastid	57.38	8.29
Bra021926.1-P	Field mustard	cytosol	54.1	7.83
Bra020236.1-P	Field mustard	nucleus	54.1	7.8
Bra005398.1-P	Field mustard	cytosol	54.1	7.77
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	54.1	7.76
Zm00001d008869_P001	Maize	cytosol	54.1	7.69
TraesCS3D01G141500.2	Wheat	nucleus	54.92	7.6
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	52.46	7.57
TraesCS3A01G312800.1	Wheat	nucleus	54.1	7.55
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	54.1	7.53
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	51.64	7.5
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	49.18	7.2
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	3.28	2.58
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	3.28	2.58
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	3.28	2.58
Os01t0200300-01	Rice	cytosol, peroxisome	2.46	0.7

Protein Annotations

EnsemblPlants:Bra030088.1	EnsemblPlants:Bra030088.1-P	EnsemblPlantsGene:Bra030088	ncoils:Coil	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217
UniParc:UPI0002541121	UniProt:M4EMR8	MapMan:35.1	:	:	:

Description

AT1G52150 (E=1e-030) ATHB-15, ATHB15, CNA, ICU4 | ATHB-15; DNA binding / transcription factor

Coordinates

chrA07:+:6664441..6666120

Molecular Weight (calculated)

14174.4 Da

IEP (calculated)

9.842

GRAVY (calculated)

-0.404

Length

122 amino acids

Sequence
(BLAST)

001: MGRRCREKQR KGASRLQALN MKLTAMNKLL MEENDRLQKQ VSHLVHEKSY FCQHTPNASL PAKDISCESV VTSGLEPTRV AEIVKDRLSW FRECRAVDVM
101: NFFVFLQGIR EVKSMQCIQL QM

Best Arabidopsis Sequence Match ( AT1G52150.3 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQVL RNIF

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.