Factsheet for Bra034539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025523.1-P
Bra036832.1-P
Bra038128.1-P
Bra039676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32880.1	Bra038128.1-P	AT1G53510.1	21798944
AT4G32880.1	Bra039676.1-P	AT1G53510.1	21798944
AT4G32880.1	Bra036832.1-P	AT3G51180.1	21798944
AT4G32880.1	Bra025523.1-P	AT5G41070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28273	Canola	nucleus	88.1	99.32
CDY45021	Canola	nucleus	87.98	99.19
Bra011392.1-P	Field mustard	cytosol	97.84	97.72
AT4G32880.1	Thale cress	nucleus	96.75	96.64
PGSC0003DMT400074932	Potato	nucleus	52.28	82.39
KRH52763	Soybean	cytosol	80.17	78.93
KRH62081	Soybean	cytosol	79.93	78.79
VIT_04s0008g03250.t01	Wine grape	cytosol	80.41	78.71
Solyc08g066500.2.1	Tomato	cytosol	78.0	78.48
PGSC0003DMT400074934	Potato	cytosol	78.85	78.19
Bra014315.1-P	Field mustard	cytosol	74.76	74.58
Bra018948.1-P	Field mustard	cytosol	74.64	74.11
GSMUA_Achr5P06550_001	Banana	cytosol	72.12	71.51
GSMUA_Achr8P20090_001	Banana	cytosol	71.63	71.12
EES00115	Sorghum	cytosol, nucleus, plastid	65.62	64.69
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	64.3	63.31
Bra030088.1-P	Field mustard	mitochondrion	9.25	63.11
Zm00001d008869_P001	Maize	cytosol	64.66	62.7
Bra021926.1-P	Field mustard	cytosol	63.46	62.63
Bra005398.1-P	Field mustard	cytosol	62.86	61.6
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	61.78	61.19
TraesCS3A01G312800.1	Wheat	nucleus	63.22	60.18
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	63.34	60.16
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	61.42	60.12
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	11.18	60.0
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	11.18	60.0
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	11.18	60.0
Bra020236.1-P	Field mustard	nucleus	60.82	59.81
TraesCS3D01G141500.2	Wheat	nucleus	63.34	59.75
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	59.38	59.3
Os01t0200300-01	Rice	cytosol, peroxisome	28.25	54.52
Zm00001d014252_P002	Maize	cytosol	8.65	41.38

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra034539	EnsemblPlants:Bra034539.1	EnsemblPlants:Bra034539.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4F0E5	InterPro:MEKHLA	PFAM:PF00046
PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000254694E	:	:	:	:	:

Description

AT4G32880 (E=0.0) ATHB-8, ATHB8 | ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor

Coordinates

chrA08:+:12941685..12946470

Molecular Weight (calculated)

91958.5 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.177

Length

832 amino acids

Sequence
(BLAST)

001: MGGGSNNSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NGNLATTDTS CESVVTSGQH HLTPQHQPRD ASPAGLLSIA DETLTEFISK ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC
201: TGIAARACGL VGLDPTRVAE ILKDRPCWLR DCRSLDIVNV LSTANGGTLE LIYMQMYAPT TLAPARDFWM LRYTSVMEDG SLVICERSLN NTQNGPSMPP
301: SPHFVRAEIL PSGYLIRPCE GGGSILHIVD HFDLEPWSVP EVLRSLYESS TLLAQRTTMA ALRYLRQISQ EISQPNVSGW GRRPAALRAL SQRLSKGFNE
401: AVNGFSDEGW SMLESDGIDD VTLLVNSSPT KMMMTSSLPF SNGFTSMPSA VLCAKASMLL QNVPPSILLR FLREHRQEWA DNSIDAYSAA AIKAGPCSLP
501: IHRPGSFGGQ VILPLAHTIE NEEFMEVIKL ESLGHYQEDM MMPADVFLLQ MCSGVDENAV ESCAELIFAP IDASFSDDAP IIPSGFRIIP LDTKSEGVSP
601: NRTLDLASAL DVGSRTAGDS CGSRGNTKSV MTIAFQLAFE MHMQENVASM ARQYVRSVIA SVQRVALALS PSSHQLSGGL RPPPASPEAH TLARWISHSY
701: RCYLGVELLK PDGTDLLKSL WHHPDALMCC SLKALPPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN KKTLCSDFPQ IMQQGFMCID GGICMSSMGR
801: AVTYEKAVAW KVLNDNEDPH CICFMFLNWS FI

Best Arabidopsis Sequence Match ( AT4G32880.1 )
(BLAST)

001: MGGGSNNSHN MDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTPQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPCWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHFDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVTG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSILESDGID DVTLLVNSSP TKMMMTSSLP FANGYTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA AAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCSGVDENA VESCAELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDVGSRTAGD SCGSRGNSKS VMTIAFQLAF EMHMQENVAS MARQYVRSVI ASVQRVALAL SPSSHQLSGL RPPPASPEAH TLARWISHSY
701: RCYLGVDLLK PHGTDLLKSL WHHPDAVMCC SLKALSPVFT FANQAGLDML ETTLVALQDI TLDKIFDNNN GKKTLSSEFP QIMQQGFMCM DGGICMSSMG
801: RAVTYEKAVG WKVLNDDEDP HCICFMFLNW SFI

Arabidopsis Description

ATHB-8Homeobox-leucine zipper protein ATHB-8 [Source:UniProtKB/Swiss-Prot;Acc:Q39123]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.