Factsheet for Bra032394.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002504.1-P
Bra006675.1-P
Bra010972.1-P
Bra012499.1-P
Bra019801.1-P
Bra020261.1-P
Bra026942.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	Bra019801.1-P	AT1G12980.1	17376809
AT1G30490.1	Bra026942.1-P	AT1G12980.1	17376809
AT1G30490.1	Bra019801.1-P	AT1G12980.1	18830673
AT1G30490.1	Bra026942.1-P	AT1G12980.1	18830673
AT1G30490.1	Bra010972.1-P	AT1G24590.1	17376809
AT1G30490.1	Bra012499.1-P	AT1G24590.1	17376809
AT1G30490.1	Bra002504.1-P	AT3G45610.1	21245844
AT1G30490.1	Bra006675.1-P	AT3G45610.1	21245844
AT1G30490.1	Bra020261.1-P	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02297	Canola	nucleus	99.88	99.88
AT1G30490.1	Thale cress	nucleus	94.88	94.77
Bra005398.1-P	Field mustard	cytosol	83.81	82.92
Bra021926.1-P	Field mustard	cytosol	83.21	82.92
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	77.14	76.69
KRH11775	Soybean	cytosol, nucleus, plastid	76.19	75.65
KRH36781	Soybean	cytosol, nucleus, plastid	76.55	75.47
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	76.55	75.47
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	75.71	74.74
GSMUA_Achr2P13060_001	Banana	cytosol	7.38	73.81
KRH43001	Soybean	cytosol	74.29	73.5
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	72.5	72.93
Solyc02g069830.2.1	Tomato	nucleus	73.1	72.92
KRH59117	Soybean	cytosol	73.45	72.33
Zm00001d013699_P001	Maize	cytosol	72.5	71.14
EER91178	Sorghum	nucleus	72.26	71.08
Zm00001d033246_P004	Maize	cytosol	72.26	70.91
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	72.5	70.65
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	72.5	70.65
Os03t0640800-01	Rice	plastid	72.14	70.55
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	72.38	70.53
GSMUA_Achr4P31660_001	Banana	cytosol	72.02	70.43
Os12t0612700-01	Rice	nucleus	71.07	69.82
GSMUA_Achr7P01060_001	Banana	cytosol	71.19	69.62
GSMUA_Achr5P02420_001	Banana	cytosol	71.79	68.99
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	69.29	68.79
GSMUA_Achr2P13050_001	Banana	cytosol	62.86	67.61
EES17386	Sorghum	mitochondrion	68.81	67.44
GSMUA_Achr4P28360_001	Banana	cytosol	71.9	67.11
GSMUA_Achr8P02960_001	Banana	cytosol	67.02	67.1
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	69.29	66.21
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	69.52	66.14
HORVU5Hr1G010650.1	Barley	cytosol	67.38	65.97
Bra002458.1-P	Field mustard	cytosol, nucleus, plastid	65.71	64.94
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	66.79	64.86
Bra038295.1-P	Field mustard	cytosol, nucleus, plastid	63.93	64.47
HORVU0Hr1G010250.3	Barley	cytosol	57.14	64.43
Bra020236.1-P	Field mustard	nucleus	64.29	63.83
Bra014315.1-P	Field mustard	cytosol	61.9	62.35
Bra018948.1-P	Field mustard	cytosol	61.9	62.05
Zm00001d031061_P007	Maize	mitochondrion	65.95	61.97
Bra034539.1-P	Field mustard	nucleus	61.19	61.78
Bra011392.1-P	Field mustard	cytosol	60.83	61.34
HORVU5Hr1G093150.2	Barley	cytosol, plastid	72.38	60.62
Bra030088.1-P	Field mustard	mitochondrion	7.5	51.64
Zm00001d018824_P001	Maize	cytosol	8.1	49.63

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra032394	EnsemblPlants:Bra032394.1	EnsemblPlants:Bra032394.1-P
ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008289	GO:GO:0009653	GO:GO:0009790	GO:GO:0009791	GO:GO:0009855	GO:GO:0009880
GO:GO:0009908	GO:GO:0009943	GO:GO:0009944	GO:GO:0010014	GO:GO:0010072	GO:GO:0080060
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4EUB2
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002542558	SEG:seg	:	:

Description

AT1G30490 (E=0.0) PHV, ATHB9 | PHV (PHAVOLUTA); DNA binding / protein binding / transcription factor

Coordinates

chrA09:+:21773709..21778127

Molecular Weight (calculated)

92162.8 Da

IEP (calculated)

6.459

GRAVY (calculated)

-0.199

Length

840 amino acids

Sequence
(BLAST)

001: MMAHSMDDRD SPEKGFDSGK YVRYTPEQVE ALERVYAECP KPSSLRRQQL IRECPILCNI EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM
101: EENDRLQKQV SHLVYENGFM KHRINTATGT TTDNGCESVV VSGQQRQQQN PTHQHPQRDA NNPAGLLSIA EETLAEFLCK ATGTAVDWVQ MIGMKPGPDS
201: IGIVAVSRNC SGIAARACGL VSLEPMKVAE ILKDRPSWFR DCRSVETLSV IPTGNGGTIE LINTQIYAPT TLAAARDFWT LRYSTSLEDG SYVVCEKSLT
301: AATGGPNGPL SSSFVRAKML SSGFLIRPCD GGGSIIHIVD HVDLDVSSVP EVLRPLYESS KILAQKMTVA ALRHVRQIAQ ETSGEVQFSG GRQPAVLRTF
401: SQRLCRGFND AVNGFADDGW SPMSSDGGED ITIMINSSSS KFAGSQYGNS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL REHRAEWADY GVDAYCAASL
501: RATPFAVPCV RTGGFPSNQV ILPLAQTLEH EEFLEVVRLG GHAYSPEDMG LSRDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL
601: DHKTSPSDHL SVNRTRDLAS SLDGSTKTDA ETNSRLVLTI AFQFTFDNHS RDNVATMARQ YVRNVVGSIQ RVALAITPRP GSMQFPTSPE ALTLARWISR
701: SYNLHTGANM FGADTQGCDG DTLLKQLWNH SDAILCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML DKTLDDSGRK ALCSEFAKIM QQGYANLPAG
801: ICVSSMGRPV SYEQATVWKV LDDSESNHCL AFILVNWSFV

Best Arabidopsis Sequence Match ( AT1G30490.1 )
(BLAST)

001: MMAHHSMDDR DSPDKGFDSG KYVRYTPEQV EALERVYAEC PKPSSLRRQQ LIRECPILCN IEPRQIKVWF QNRRCREKQR KESARLQTVN RKLSAMNKLL
101: MEENDRLQKQ VSNLVYENGF MKHRIHTASG TTTDNSCESV VVSGQQRQQQ NPTHQHPQRD VNNPANLLSI AEETLAEFLC KATGTAVDWV QMIGMKPGPD
201: SIGIVAVSRN CSGIAARACG LVSLEPMKVA EILKDRPSWF RDCRCVETLN VIPTGNGGTI ELVNTQIYAP TTLAAARDFW TLRYSTSLED GSYVVCERSL
301: TSATGGPNGP LSSSFVRAKM LSSGFLIRPC DGGGSIIHIV DHVDLDVSSV PEVLRPLYES SKILAQKMTV AALRHVRQIA QETSGEVQYS GGRQPAVLRT
401: FSQRLCRGFN DAVNGFVDDG WSPMSSDGGE DITIMINSSS AKFAGSQYGS SFLPSFGSGV LCAKASMLLQ NVPPLVLIRF LREHRAEWAD YGVDAYSAAS
501: LRATPYAVPC VRTGGFPSNQ VILPLAQTLE HEEFLEVVRL GGHAYSPEDM GLSRDMYLLQ LCSGVDENVV GGCAQLVFAP IDESFADDAP LLPSGFRVIP
601: LDQKTNPNDH QSASRTRDLA SSLDGSTKTD SETNSRLVLT IAFQFTFDNH SRDNVATMAR QYVRNVVGSI QRVALAITPR PGSMQLPTSP EALTLVRWIT
701: RSYSIHTGAD LFGADSQSCG GDTLLKQLWD HSDAILCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM LDKTLDDSGR RALCSEFAKI MQQGYANLPA
801: GICVSSMGRP VSYEQATVWK VVDDNESNHC LAFTLVSWSF V

Arabidopsis Description

ATHB-9Homeobox-leucine zipper protein ATHB-9 [Source:UniProtKB/Swiss-Prot;Acc:O04292]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.