Factsheet for VIT_10s0003g04670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0291g00030.t01
VIT_00s0652g00010.t01
VIT_02s0025g02250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30490.1	VIT_00s0291g00030.t01	AT1G24590.1	17376809
AT1G30490.1	VIT_00s0652g00010.t01	AT3G45610.1	21245844
AT2G34710.1	VIT_02s0025g02250.t01	AT1G64620.1	21245844
AT2G34710.1	VIT_00s0652g00010.t01	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11775	Soybean	cytosol, nucleus, plastid	88.17	88.06
KRH36781	Soybean	cytosol, nucleus, plastid	87.1	86.39
Solyc02g024070.2.1	Tomato	cytosol, nucleus, plastid	86.04	85.43
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	85.44	84.74
KRH43001	Soybean	cytosol	84.38	83.98
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	81.3	82.28
GSMUA_Achr2P13060_001	Banana	cytosol	8.17	82.14
Solyc02g069830.2.1	Tomato	nucleus	81.66	81.95
KRH59117	Soybean	cytosol	82.37	81.59
EER91178	Sorghum	nucleus	80.95	80.09
GSMUA_Achr4P31660_001	Banana	cytosol	81.3	79.98
Zm00001d033246_P004	Maize	cytosol	80.71	79.67
Zm00001d013699_P001	Maize	cytosol	80.47	79.44
Os03t0640800-01	Rice	plastid	80.24	78.93
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	80.36	78.77
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	80.24	78.65
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	80.12	78.54
GSMUA_Achr7P01060_001	Banana	cytosol	79.64	78.35
GSMUA_Achr5P02420_001	Banana	cytosol	80.71	78.03
AT2G34710.1	Thale cress	cytosol	78.58	77.93
GSMUA_Achr2P13050_001	Banana	cytosol	71.83	77.72
AT1G30490.1	Thale cress	nucleus	76.8	77.17
Bra032394.1-P	Field mustard	cytosol, nucleus, plastid	76.69	77.14
Bra005398.1-P	Field mustard	cytosol	77.4	77.03
Bra021926.1-P	Field mustard	cytosol	76.69	76.87
Os12t0612700-01	Rice	nucleus	77.63	76.73
GSMUA_Achr8P02960_001	Banana	cytosol	76.09	76.64
GSMUA_Achr4P28360_001	Banana	cytosol	80.71	75.78
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	75.86	75.77
VIT_06s0004g02800.t01	Wine grape	nucleus	72.78	72.87
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	75.62	72.7
EES17386	Sorghum	mitochondrion	73.73	72.7
HORVU5Hr1G010650.1	Barley	cytosol	73.61	72.49
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	75.74	72.48
HORVU0Hr1G010250.3	Barley	cytosol	63.2	71.68
VIT_09s0002g03740.t01	Wine grape	cytosol	71.12	71.46
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	72.78	71.1
VIT_04s0008g03250.t01	Wine grape	cytosol	69.23	68.82
Zm00001d031061_P007	Maize	mitochondrion	71.72	67.79
HORVU5Hr1G093150.2	Barley	cytosol, plastid	80.12	67.5
VIT_13s0019g04320.t01	Wine grape	nucleus	64.26	64.57
VIT_18s0001g00620.t01	Wine grape	cytosol	6.63	54.37
Zm00001d018824_P001	Maize	cytosol	8.64	53.28
CDX71242	Canola	peroxisome	4.97	50.0
AT5G32670.1	Thale cress	cytosol, plastid	10.06	44.27
CDY53980	Canola	cytosol, nucleus, peroxisome	7.69	41.94

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100254822	wikigene:100254822	MapMan:15.5.3.2	Gene3D:3.30.530.20	UniProt:A5AMZ1
EMBL:AM430458	ProteinID:CAN73584	ProteinID:CAN73584.1	ProteinID:CBI30999	ProteinID:CBI30999.3	ncoils:Coil
EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100254822	wikigene:LOC100254822	InterPro:MEKHLA
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	TIGR:TC71172	UniParc:UPI000151F0E3	ArrayExpress:VIT_10s0003g04670	EnsemblPlantsGene:VIT_10s0003g04670	EnsemblPlants:VIT_10s0003g04670.t01
unigene:Vvi.5556	RefSeq:XP_002281868	RefSeq:XP_002281868.2	RefSeq:XP_003633040	RefSeq:XP_003633040.1	RefSeq:XP_003633041
RefSeq:XP_003633041.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:8333667..8341190

Molecular Weight (calculated)

92841.2 Da

IEP (calculated)

6.250

GRAVY (calculated)

-0.161

Length

845 amino acids

Sequence
(BLAST)

001: MALSMHKESK QQMDSSKYVR YTPEQVEALE RVYSECPKPS SMRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VYENGYMRQQ LQSASTATTD TSCESVVMSG QHQQQQNPTP QHPQRDASNP AGLLAIAEET LAEFLSKATG TAVDWVQMIG MKPGPDSIGI
201: VAVSRNCSGV AARACGLVSL EPTKVAEILK DRPSWFRDCR CLDVLSVIPT GNGGTIELIY MQTYAPTTLA SARDFWTLRY TTSLEDGSLV ICERSLTSST
301: GGPTGPPASS YIRAEMLPSG YLIRPCEGGG SIIHIVDHVD LDAWSVPEVL RPLYESSKIL AQKTTVAALR HIRQIAQETS GEIQYGGGRQ PAVLRTFSQR
401: LCRGFNDAVN GFADDGWSLM GSDGVEDVTI VINSSPSKFL GPQYNSTMFP TFGGGVLCAK ASMLLQNVPP ALLVRFLREH RSEWADYGVD AYSAACLKAS
501: PYEVPCARPG GFPSSQVILP LAHTVEHEEF LEVVRLEGHA FSPEDVALTR DMYLLQLCSG VDENAAGACA QLVFAPIDES FADDAPLLPS GFRVIPLDPK
601: TDGPAATRTL DLASTLEVGA GGARPANESD LNNYNLRSVL TIAFQFTFEN HVRDNVAAMA RQYVRSVMAS VQRVAMAIAP SRLSSHMGLK PLPGSPEALT
701: LARWICRSYR IHTGGELLRV DSQGGDAVLK LLWNHSDAIM CCSLKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD EAGRKILCSE FSKIMQQGFA
801: YLPAGICTSS MGRPVSYEQA IAWKVLNDED SNHCLAFMFI NWSFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.