Factsheet for VIT_09s0002g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47223	Soybean	nucleus	89.06	89.38
KRH58026	Soybean	cytosol	24.73	88.51
KRH44288	Soybean	nucleus	87.99	88.31
KRH47225	Soybean	cytosol	87.16	87.16
PGSC0003DMT400006735	Potato	cytosol	86.21	86.83
Solyc03g120910.2.1	Tomato	cytosol	85.85	86.36
CDY47819	Canola	cytosol	85.73	86.04
CDY60592	Canola	cytosol	85.61	85.92
AT1G52150.2	Thale cress	cytosol	85.37	85.78
CDY02553	Canola	cytosol	85.14	85.75
Bra018948.1-P	Field mustard	cytosol	85.37	85.68
PGSC0003DMT400068037	Potato	cytosol	85.14	85.54
Solyc12g044410.1.1	Tomato	nucleus	85.02	85.42
Bra014315.1-P	Field mustard	cytosol	84.66	85.37
VIT_04s0008g03250.t01	Wine grape	cytosol	85.61	84.71
KRH44292	Soybean	cytosol	85.49	84.59
CDY51188	Canola	nucleus	72.06	84.05
GSMUA_Achr5P06550_001	Banana	cytosol	78.0	78.19
GSMUA_Achr8P20090_001	Banana	cytosol	77.65	77.92
VIT_18s0001g00620.t01	Wine grape	cytosol	9.27	75.73
VIT_10s0003g04670.t01	Wine grape	cytosol, nucleus, plastid	71.46	71.12
EES00115	Sorghum	cytosol, nucleus, plastid	69.44	69.19
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	12.6	68.39
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	12.6	68.39
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	12.6	68.39
VIT_06s0004g02800.t01	Wine grape	nucleus	68.37	68.13
Zm00001d008869_P001	Maize	cytosol	68.37	67.02
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	67.18	66.86
Bra030088.1-P	Field mustard	mitochondrion	9.51	65.57
TraesCS3A01G312800.1	Wheat	nucleus	67.78	65.22
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	67.18	64.5
TraesCS3D01G141500.2	Wheat	nucleus	67.42	64.29
VIT_13s0019g04320.t01	Wine grape	nucleus	59.93	59.93
Os01t0200300-01	Rice	cytosol, peroxisome	30.2	58.93
Zm00001d014252_P002	Maize	cytosol	9.04	43.68

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100260057	wikigene:100260057	MapMan:15.5.3.2	Gene3D:3.30.530.20	ProteinID:CCB59437
ProteinID:CCB59437.1	ncoils:Coil	UniProt:F6HYB4	EMBL:FN596494	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009653	GO:GO:0009791
GO:GO:0009855	GO:GO:0009908	GO:GO:0009965	GO:GO:0010014	GO:GO:0010075	GO:GO:0010087
GO:GO:0040007	GO:GO:0048263	GO:GO:0080060	GO:GO:1905392	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	EntrezGene:LOC100260057	wikigene:LOC100260057	InterPro:MEKHLA
PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF217	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000210A217	ArrayExpress:VIT_09s0002g03740	EnsemblPlantsGene:VIT_09s0002g03740	EnsemblPlants:VIT_09s0002g03740.t01	RefSeq:XP_002284003
RefSeq:XP_002284003.1	RefSeq:XP_002284009	RefSeq:XP_002284009.1	RefSeq:XP_002284014	RefSeq:XP_002284014.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:3414759..3424840

Molecular Weight (calculated)

92647.4 Da

IEP (calculated)

6.467

GRAVY (calculated)

-0.130

Length

841 amino acids

Sequence
(BLAST)

001: MSCKDGKGIM DNGKYVRYTP EQVEALERLY HECPKPSSIR RQQLIRECPI LSNIEPKQIK VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENDRL
101: QKQVSQLVYE NGYFRQHTQN TTLATKDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM PGMKPGPDSI GIVAISHGCT
201: GVAARACGLV GLEPTRVAEI LKDRPSWFRD CRAVDVLNVL PTANGGTIEL LYMQLYAPTT LAPARDFWLL RYTSVMEDGS LVVCERSLKN TQNGPSMPPV
301: QHFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPWSVPE VLRPLYESST VLAQKTTMAA LRQLRQIAQE VSQSNVTGWG RRPAALRALS QRLSRGFNEA
401: LNGFTDEGWS MMGNDGIDDV TILVNSSPEK LTGLNLSFAN GFPAVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN NIDAYSAAAV KVGPCSLPGS
501: RVGSFGSQVI LPLAHTIEHE EASNLFIFLE VIKLEGVGHC PEDAMMPRDM FLLQLCSGMD ENAVGTCAEL IFAPIDASFA DDAPLLPSGF RIIPLDSGKE
601: ASSPNRTLDL ASALEIGPAG NRSSNDYSVN GGNTRSVMTI AFEFAFESHL QENVASMARQ YVRSIISSVQ RVALALSPSH LSSHAGLRPP LGTPEAHTLA
701: RWISHSYRCY LGVELLKSSG EGSETILKTL WHLSDAIMCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDHGR KTLCSEFPQI MQQGFACLQG
801: GICLSSMGRP VSYERAVAWK VLNEEENAHC VCFMFMNWSF V

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.