CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02553	Canola	cytosol	94.45	81.56
CDY60592	Canola	cytosol	93.07	80.07
AT1G52150.2	Thale cress	cytosol	92.51	79.69
CDY47819	Canola	cytosol	92.51	79.59
KRH58026	Soybean	cytosol	25.94	79.57
CDY69514	Canola	nucleus	66.02	75.56
VIT_09s0002g03740.t01	Wine grape	cytosol	84.05	72.06
CDY45021	Canola	nucleus	72.82	71.14
CDY28273	Canola	nucleus	72.68	71.0
KRH47223	Soybean	nucleus	82.39	70.88
KRH44288	Soybean	nucleus	81.69	70.29
KRH47225	Soybean	cytosol	81.0	69.44
Solyc03g120910.2.1	Tomato	cytosol	80.44	69.38
PGSC0003DMT400006735	Potato	cytosol	80.17	69.22
PGSC0003DMT400068037	Potato	cytosol	78.64	67.74
Solyc12g044410.1.1	Tomato	nucleus	78.36	67.5
KRH44292	Soybean	cytosol	79.33	67.29
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	13.87	64.52
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	13.87	64.52
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	13.87	64.52
GSMUA_Achr5P06550_001	Banana	cytosol	73.37	63.05
GSMUA_Achr8P20090_001	Banana	cytosol	73.09	62.89
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	65.74	56.09
EES00115	Sorghum	cytosol, nucleus, plastid	65.6	56.04
CDY43661	Canola	cytosol	62.27	55.23
Zm00001d008869_P001	Maize	cytosol	64.91	54.55
TraesCS3A01G312800.1	Wheat	nucleus	65.6	54.12
CDY31032	Canola	cytosol	57.42	54.05
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	65.33	53.77
TraesCS3D01G141500.2	Wheat	nucleus	65.74	53.74
CDY31635	Canola	nucleus	63.11	53.59
CDX84286	Canola	cytosol	62.83	53.36
CDY09572	Canola	cytosol, nucleus, plastid	61.44	52.74
CDY02297	Canola	nucleus	61.44	52.74
CDY52706	Canola	cytosol, nucleus, plastid	61.58	52.42
CDY31519	Canola	cytosol, nucleus, plastid	61.72	52.35
CDX99164	Canola	cytosol, nucleus, plastid	58.25	50.06
CDY09191	Canola	cytosol	51.18	49.53
Zm00001d014252_P002	Maize	cytosol	9.71	40.23
Os01t0200300-01	Rice	cytosol, peroxisome	22.61	37.82
CDX68901	Canola	plastid	6.93	24.75
CDX82038	Canola	extracellular	3.47	15.43
CDY53980	Canola	cytosol, nucleus, peroxisome	3.05	14.19
CDX71242	Canola	peroxisome	0.55	4.76
CDY57624	Canola	extracellular	0.55	4.3
CDY27014	Canola	cytosol, plasma membrane	0.42	4.0
CDY31031	Canola	extracellular	0.42	2.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078IQ03	UniProt:A0A078IQ03	EnsemblPlants:CDY51188
ProteinID:CDY51188	ProteinID:CDY51188.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00098397001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF217
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0004EF1FC9	SEG:seg	:	:	:	:

Description

BnaC03g69040DBnaC03g69040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ03]

Coordinates

chrLK032974:+:4216..7869

Molecular Weight (calculated)

79193.3 Da

IEP (calculated)

6.890

GRAVY (calculated)

-0.128

Length

721 amino acids

Sequence
(BLAST)

001: MAMSYKDGGK MGCMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE
101: NDRLQKQVSQ LVHENSYFRQ HTPNPSLPAK DTSCESVVTS GQHQVASLNP PRDASPAGLL SIAEETLAEF LSKATGTAVE WVQMPGMKPG PDSIGIIAIS
201: HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP
301: VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF
401: NEAVNGFTDE GWSVIGDSMD DVTITVNSSA DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA DNNIDAYLAA AVKVGPCSAR
501: VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP RDIFLLQLCS GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKQEASSPNR
601: TLDLASALEI GPAGTTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARNYVRGI IASVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRYNIYIYI YIYIYIYMYV S

Best Arabidopsis Sequence Match ( AT1G52150.2 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKQEVSSP
601: NRTLDLASAL EIGSAGTKAS TDQSGNSTCA RSVMTIAFEF GIESHMQEHV ASMARQYVRG IISSVQRVAL ALSPSHISSQ VGLRTPLGTP EAQTLARWIC
701: QSYRGYMGVE LLKSNSDGNE SILKNLWHHT DAIICCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDDNGRKTLC SEFPQIMQQG FACLQGGICL
801: SSMGRPVSYE RAVAWKVLNE EENAHCICFV FINWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.