CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71050
CDX80191
CDX88742
CDY08392
CDY09221
CDY31568
CDY38177
CDY70840

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34710.1	CDY08392	AT1G64620.1	21245844
AT2G34710.1	CDY70840	AT1G64620.1	21245844
AT2G34710.1	CDY38177	AT2G18060.1	21245844
AT2G34710.1	CDX71050	AT3G45610.1	21245844
AT2G34710.1	CDX80191	AT3G45610.1	21245844
AT2G34710.1	CDX88742	AT3G45610.1	21245844
AT2G34710.1	CDY09221	AT3G45610.1	21245844
AT2G34710.1	CDY31568	AT3G45610.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021926.1-P	Field mustard	cytosol	96.68	93.24
CDY31635	Canola	nucleus	92.74	88.81
AT2G34710.1	Thale cress	cytosol	92.5	88.26
CDX84286	Canola	cytosol	92.13	88.22
CDY02297	Canola	nucleus	83.52	80.83
CDY09572	Canola	cytosol, nucleus, plastid	83.52	80.83
GSMUA_Achr2P13060_001	Banana	cytosol	7.63	73.81
Os03t0640800-01	Rice	plastid	74.42	70.43
GSMUA_Achr4P31660_001	Banana	cytosol	74.42	70.43
EER91178	Sorghum	nucleus	73.8	70.26
Zm00001d033246_P004	Maize	cytosol	73.92	70.21
Zm00001d013699_P001	Maize	cytosol	73.8	70.09
GSMUA_Achr7P01060_001	Banana	cytosol	73.31	69.38
TraesCS5D01G385300.1	Wheat	cytosol, nucleus, plastid	73.55	69.37
TraesCS5B01G378000.1	Wheat	cytosol, nucleus, plastid	73.55	69.37
TraesCS5A01G375800.1	Wheat	cytosol, nucleus, plastid	73.55	69.37
Os12t0612700-01	Rice	nucleus	72.57	69.01
GSMUA_Achr5P02420_001	Banana	cytosol	73.92	68.76
TraesCS5A01G043400.1	Wheat	cytosol, nucleus, plastid	71.09	68.32
GSMUA_Achr2P13050_001	Banana	cytosol	64.94	67.61
EES17386	Sorghum	mitochondrion	69.99	66.39
GSMUA_Achr8P02960_001	Banana	cytosol	68.27	66.15
GSMUA_Achr4P28360_001	Banana	cytosol	73.19	66.11
TraesCS5D01G052300.1	Wheat	mitochondrion, plastid	71.22	65.57
TraesCS5B01G047200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	70.6	65.3
HORVU5Hr1G010650.1	Barley	cytosol	68.63	65.03
Zm00001d041489_P009	Maize	cytosol, nucleus, plastid	68.88	64.74
CDY31519	Canola	cytosol, nucleus, plastid	66.3	63.41
CDY52706	Canola	cytosol, nucleus, plastid	66.05	63.4
CDY02553	Canola	cytosol	65.07	63.35
CDX99164	Canola	cytosol, nucleus, plastid	65.31	63.29
CDY47819	Canola	cytosol	65.19	63.25
CDY60592	Canola	cytosol	65.19	63.25
HORVU0Hr1G010250.3	Barley	cytosol	57.93	63.22
CDY69514	Canola	nucleus	48.59	62.7
CDY51188	Canola	nucleus	55.23	62.27
CDY45021	Canola	nucleus	55.72	61.38
CDY28273	Canola	nucleus	55.72	61.38
CDY09191	Canola	cytosol	56.21	61.34
Zm00001d031061_P007	Maize	mitochondrion	66.91	60.85
CDY31031	Canola	extracellular	8.0	60.75
HORVU5Hr1G093150.2	Barley	cytosol, plastid	73.55	59.62
CDY31032	Canola	cytosol	55.97	59.4
CDX68901	Canola	plastid	14.15	56.93
CDY27014	Canola	cytosol, plasma membrane	4.92	53.33
CDY57624	Canola	extracellular	6.03	52.69
Zm00001d018824_P001	Maize	cytosol	8.36	49.63
CDX71242	Canola	peroxisome	4.92	47.62
CDX82038	Canola	extracellular	8.0	40.12
CDY53980	Canola	cytosol, nucleus, peroxisome	7.63	40.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078I1I9	UniProt:A0A078I1I9	EnsemblPlants:CDY43661
ProteinID:CDY43661	ProteinID:CDY43661.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00077008001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF494	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0004EF3F9C	SEG:seg	:	:

Description

BnaA04g20300DBnaA04g20300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1I9]

Coordinates

chrLK032564:+:113327..117638

Molecular Weight (calculated)

89187.4 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.199

Length

813 amino acids

Sequence
(BLAST)

001: MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME
101: ENDRLQKQVS HLVYENGHMK HQIHTASGTT TDNSCESVVV ASGQQHQQQN PNPQHLQRDA NNPAGLLSIA KEALAEFLSK ATGTAVDWVQ MIGMKPGPDS
201: IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR DCRSVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYTTCLEDG SYVVCERSLS
301: AATGGPTGPP SSNFVRAEMR PSGFLIRPCD GGGSILHIVD HVDLDALSVP EVMRPLYESS KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF
401: SQRLSRGFND AVNGFVDDGC FGSGVLCAKA SMLLQNVPPA VLVRFLREHR SEWADYGVDA YAAASLRASP FAVPCARAGG LPSNQVILPL AQTVEHEEFL
501: EVVRLEGHAY SPEDMGLARD MYLLQLCSGV DEDVVGGCAQ LVFAPIDESF ADDAPLLPSG FRVIPLEPKS TSNNASVNRT LDLASALEGS TRQGGEADPN
601: GCHFRSVLTI AFQFTFDNHT RDNVASMARQ YVRNIVGSIQ RVALAIAPRP DSSISPISAP TSPEALTLVR WISRSYRVHT GVDLFGSDSQ ISGDTLLHQV
701: WSHTDAILCC SMKTNASPVF TFANQTGLDM LETTLVSLQD ITLDKTLDEP GRKALCSEFP KIMQQGYAHL PAGVCASSMG RLVSYEQATV WKVLEDDESN
801: HCLAFMFVNW SFV

Best Arabidopsis Sequence Match ( AT2G34710.1 )
(BLAST)

001: MMMVHSMSRD MMNRESPDKG LDSGKYVRYT PEQVEALERV YTECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEAARL QTVNRKLNAM
101: NKLLMEENDR LQKQVSNLVY ENGHMKHQLH TASGTTTDNS CESVVVSGQQ HQQQNPNPQH QQRDANNPAG LLSIAEEALA EFLSKATGTA VDWVQMIGMK
201: PGPDSIGIVA ISRNCSGIAA RACGLVSLEP MKVAEILKDR PSWLRDCRSV DTLSVIPAGN GGTIELIYTQ MYAPTTLAAA RDFWTLRYST CLEDGSYVVC
301: ERSLTSATGG PTGPPSSNFV RAEMKPSGFL IRPCDGGGSI LHIVDHVDLD AWSVPEVMRP LYESSKILAQ KMTVAALRHV RQIAQETSGE VQYGGGRQPA
401: VLRTFSQRLC RGFNDAVNGF VDDGWSPMGS DGAEDVTVMI NLSPGKFGGS QYGNSFLPSF GSGVLCAKAS MLLQNVPPAV LVRFLREHRS EWADYGVDAY
501: AAASLRASPF AVPCARAGGF PSNQVILPLA QTVEHEESLE VVRLEGHAYS PEDMGLARDM YLLQLCSGVD ENVVGGCAQL VFAPIDESFA DDAPLLPSGF
601: RIIPLEQKST PNGASANRTL DLASALEGST RQAGEADPNG CNFRSVLTIA FQFTFDNHSR DSVASMARQY VRSIVGSIQR VALAIAPRPG SNISPISVPT
701: SPEALTLVRW ISRSYSLHTG ADLFGSDSQT SGDTLLHQLW NHSDAILCCS LKTNASPVFT FANQTGLDML ETTLVALQDI MLDKTLDEPG RKALCSEFPK
801: IMQQGYAHLP AGVCASSMGR MVSYEQATVW KVLEDDESNH CLAFMFVNWS FV

Arabidopsis Description

ATHB-14Homeobox-leucine zipper protein ATHB-14 [Source:UniProtKB/Swiss-Prot;Acc:O04291]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.