CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074932	Potato	nucleus	68.57	81.82
CDY28273	Canola	nucleus	93.97	80.22
CDY45021	Canola	nucleus	93.81	80.08
CDY51188	Canola	nucleus	75.56	66.02
Solyc08g066500.2.1	Tomato	cytosol	79.68	60.7
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	14.92	60.65
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	14.92	60.65
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	14.92	60.65
PGSC0003DMT400074934	Potato	cytosol	80.32	60.31
KRH52763	Soybean	cytosol	80.16	59.76
KRH62081	Soybean	cytosol	80.0	59.72
VIT_04s0008g03250.t01	Wine grape	cytosol	80.48	59.65
CDY47819	Canola	cytosol	76.98	57.88
CDY02553	Canola	cytosol	76.67	57.84
CDY60592	Canola	cytosol	76.83	57.76
GSMUA_Achr5P06550_001	Banana	cytosol	73.65	55.3
GSMUA_Achr8P20090_001	Banana	cytosol	72.38	54.42
EES00115	Sorghum	cytosol, nucleus, plastid	66.51	49.64
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	66.51	49.59
Zm00001d008869_P001	Maize	cytosol	66.19	48.6
CDY43661	Canola	cytosol	62.7	48.59
CDY31032	Canola	cytosol	58.1	47.78
TraesCS3A01G312800.1	Wheat	nucleus	66.19	47.71
CDY31635	Canola	nucleus	63.81	47.35
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	65.56	47.15
CDX84286	Canola	cytosol	63.49	47.11
TraesCS3D01G141500.2	Wheat	nucleus	65.56	46.83
CDY09572	Canola	cytosol, nucleus, plastid	62.38	46.79
CDY02297	Canola	nucleus	62.38	46.79
CDY52706	Canola	cytosol, nucleus, plastid	61.43	45.69
CDY31519	Canola	cytosol, nucleus, plastid	61.59	45.65
CDX99164	Canola	cytosol, nucleus, plastid	59.68	44.82
CDY09191	Canola	cytosol	50.32	42.55
Zm00001d014252_P002	Maize	cytosol	10.63	38.51
Os01t0200300-01	Rice	cytosol, peroxisome	18.41	26.91
CDY53980	Canola	cytosol, nucleus, peroxisome	3.81	15.48
CDX82038	Canola	extracellular	2.54	9.88
CDX71242	Canola	peroxisome	0.63	4.76
CDY31031	Canola	extracellular	0.79	4.67
CDX68901	Canola	plastid	0.48	1.49
CDY57624	Canola	extracellular	0.16	1.08
CDY27014	Canola	cytosol, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.2	Gene3D:3.30.530.20	GO:A0A078JRR2	UniProt:A0A078JRR2	EnsemblPlants:CDY69514
ProteinID:CDY69514	ProteinID:CDY69514.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289
EnsemblPlantsGene:GSBRNA2T00088471001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF344
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI0004EE0A1B	:	:	:	:	:

Description

BnaAnng30670DBnaAnng30670D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JRR2]

Coordinates

chrLK039597:-:2..3403

Molecular Weight (calculated)

69273.8 Da

IEP (calculated)

5.939

GRAVY (calculated)

-0.276

Length

630 amino acids

Sequence
(BLAST)

001: MGGGSNSSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIRECP ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR
101: LQKQVSHLVY ENSYFRQHPQ NQGNLATTDT SCESVVTSGQ HHLTSQHQPR DASPAGLLSI ADETLTEFIS KATGTAVEWV QMPGMKPGPD SIGIVAISHG
201: CTGIAARACG LVGLDPTRVA EILKDKPSWL RDCRSLDIVN VLSTANGGTL ELIYMQLYAP TTLAPARDFW MLRYTSVMED GSLVICERSL NNTQNGPSMP
301: PSPHFVRAEI LPSGYLIRPC EGGGSILHIV DHLDLEPWSV PEVLRSLYES STLLAQRTTM AALRYLRQIS QEISQPNVSG WGRRPAALRA LSQRLSKGFN
401: EAVNGFSDEG WSMLESDGID DVTLLVNSSP TKMMMTSSLP FSNGFTSMPS AVLCAKASML LQNVPPSILL RFLREHRQEW ADNSIDAYSA SAIKAGPCSL
501: PIPRPGSFGG QVILPLAHTI ENEEFMEVIK LESLGHYQED MMMPADIFLL QMCGGVDENA VESCSELIFA PIDASFSDDA PIIPSGFRII PLDSKSEGLS
601: PNRTLDLASA LDIGSRTAGD SCGSRGNTKS

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.