Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074932 | Potato | nucleus | 61.98 | 98.48 |
| Solyc08g066500.2.1 | Tomato | cytosol | 95.83 | 97.22 |
| KRH62081 | Soybean | cytosol | 84.03 | 83.53 |
| VIT_04s0008g03250.t01 | Wine grape | cytosol | 84.62 | 83.53 |
| KRH52763 | Soybean | cytosol | 83.67 | 83.08 |
| CDY69514 | Canola | nucleus | 60.31 | 80.32 |
| PGSC0003DMT400006735 | Potato | cytosol | 79.74 | 80.12 |
| Bra011392.1-P | Field mustard | cytosol | 78.43 | 78.99 |
| CDY45021 | Canola | nucleus | 69.37 | 78.86 |
| PGSC0003DMT400068037 | Potato | cytosol | 78.67 | 78.85 |
| Bra034539.1-P | Field mustard | nucleus | 78.19 | 78.85 |
| CDY28273 | Canola | nucleus | 69.25 | 78.73 |
| AT4G32880.1 | Thale cress | nucleus | 78.07 | 78.63 |
| GSMUA_Achr8P20090_001 | Banana | cytosol | 75.92 | 76.01 |
| GSMUA_Achr5P06550_001 | Banana | cytosol | 75.69 | 75.69 |
| CDX68901 | Canola | plastid | 17.04 | 70.79 |
| EES00115 | Sorghum | cytosol, nucleus, plastid | 68.06 | 67.65 |
| PGSC0003DMT400030829 | Potato | cytosol, nucleus, plastid | 66.98 | 65.96 |
| HORVU3Hr1G026990.3 | Barley | cytosol, nucleus, plastid | 66.03 | 65.56 |
| Zm00001d008869_P001 | Maize | cytosol | 66.98 | 65.5 |
| PGSC0003DMT400020801 | Potato | cytosol, nucleus, plastid | 65.44 | 65.28 |
| PGSC0003DMT400054421 | Potato | cytosol, nucleus, plastid | 64.6 | 64.91 |
| TraesCS3A01G312800.1 | Wheat | nucleus | 66.27 | 63.62 |
| TraesCS3B01G159100.2 | Wheat | cytosol, nucleus, plastid | 65.79 | 63.01 |
| TraesCS3D01G141500.2 | Wheat | nucleus | 65.91 | 62.7 |
| Os06t0722300-01 | Rice | extracellular, mitochondrion, plastid | 11.56 | 62.58 |
| Os06t0722650-01 | Rice | extracellular, mitochondrion, plastid | 11.56 | 62.58 |
| Os06t0720500-01 | Rice | extracellular, mitochondrion, plastid | 11.56 | 62.58 |
| Os01t0200300-01 | Rice | cytosol, peroxisome | 30.15 | 58.7 |
| Zm00001d014252_P002 | Maize | cytosol | 8.7 | 41.95 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.2 | Gene3D:3.30.530.20 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008289 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 |
| UniProt:M1CUD5 | InterPro:MEKHLA | PFAM:PF00046 | PFAM:PF01852 | PFAM:PF08670 | EnsemblPlantsGene:PGSC0003DMG402029143 |
| PGSC:PGSC0003DMG402029143 | EnsemblPlants:PGSC0003DMT400074934 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF344 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom |
| UniParc:UPI000295E416 | SEG:seg | : | : | : | : |
Description
Class III HD-Zip protein 8 [Source:PGSC_GENE;Acc:PGSC0003DMG402029143]
Coordinates
chr8:-:38726913..38733656
Molecular Weight (calculated)
92217.7 Da
IEP (calculated)
5.915
GRAVY (calculated)
-0.127
Length
839 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTSSCKDK FGMDSGKYVR YTPEQVDALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQGVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VYENSFFRQQ TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE WVQMPGMKPG PDSIGIIAIS
201: HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS
301: MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG
401: FNEAVNGFTD EGWSMLESDG IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE WADSGIDAYS AAAVKAGPCS
501: IPVTRTGSFG GQIILPLAHT IEHEEFMEVI RLESIGHYQD DMIMPSDIFL LQLCNGVDEN AVGSCAELMF APIDASFADD APLLPSGFRI IPLDAKADAS
601: SPNRTLDLAS TLEVGPAGSR PTGDHSKNSG STKSVMTIAF QFAFEIHLQE SIAAMARQYV RSIISSVQRV ALALSPSRIG SLPGLRSPPG TPEAQTLARW
701: ICQSYRYFLG VELLKSASGG SDTILKEIWD HSDALMCCSM KALPVFTFAN EAGLDMLETT LVALQDISLE KIFDDNGRKA LYSELPQIMQ QGFACLQGGI
801: CLSSMGRPIS YERAVAWKVL NEEEDAHCIC FMFINWSFV
101: DRLQKQVSQL VYENSFFRQQ TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE WVQMPGMKPG PDSIGIIAIS
201: HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS
301: MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG
401: FNEAVNGFTD EGWSMLESDG IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE WADSGIDAYS AAAVKAGPCS
501: IPVTRTGSFG GQIILPLAHT IEHEEFMEVI RLESIGHYQD DMIMPSDIFL LQLCNGVDEN AVGSCAELMF APIDASFADD APLLPSGFRI IPLDAKADAS
601: SPNRTLDLAS TLEVGPAGSR PTGDHSKNSG STKSVMTIAF QFAFEIHLQE SIAAMARQYV RSIISSVQRV ALALSPSRIG SLPGLRSPPG TPEAQTLARW
701: ICQSYRYFLG VELLKSASGG SDTILKEIWD HSDALMCCSM KALPVFTFAN EAGLDMLETT LVALQDISLE KIFDDNGRKA LYSELPQIMQ QGFACLQGGI
801: CLSSMGRPIS YERAVAWKVL NEEEDAHCIC FMFINWSFV
001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV
Arabidopsis Description
ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.