Factsheet for PGSC0003DMT400068037

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044410.1.1	Tomato	nucleus	98.92	98.92
PGSC0003DMT400006735	Potato	cytosol	87.22	87.43
VIT_09s0002g03740.t01	Wine grape	cytosol	85.54	85.14
KRH47223	Soybean	nucleus	82.92	82.82
KRH44288	Soybean	nucleus	82.32	82.22
KRH58026	Soybean	cytosol	22.94	81.7
CDY47819	Canola	cytosol	81.72	81.62
CDY60592	Canola	cytosol	81.6	81.5
AT1G52150.2	Thale cress	cytosol	81.36	81.36
CDY02553	Canola	cytosol	81.12	81.32
Bra018948.1-P	Field mustard	cytosol	81.36	81.26
KRH47225	Soybean	cytosol	81.24	80.86
Bra014315.1-P	Field mustard	cytosol	80.53	80.82
PGSC0003DMT400074932	Potato	nucleus	50.42	79.92
KRH44292	Soybean	cytosol	80.05	78.82
PGSC0003DMT400074934	Potato	cytosol	78.85	78.67
CDY51188	Canola	nucleus	67.74	78.64
GSMUA_Achr8P20090_001	Banana	cytosol	73.6	73.51
GSMUA_Achr5P06550_001	Banana	cytosol	73.48	73.3
EES00115	Sorghum	cytosol, nucleus, plastid	66.55	66.0
HORVU3Hr1G026990.3	Barley	cytosol, nucleus, plastid	65.59	64.97
PGSC0003DMT400020801	Potato	cytosol, nucleus, plastid	64.76	64.45
Zm00001d008869_P001	Maize	cytosol	65.59	63.99
PGSC0003DMT400030829	Potato	cytosol, nucleus, plastid	64.99	63.85
TraesCS3A01G312800.1	Wheat	nucleus	65.71	62.93
PGSC0003DMT400054421	Potato	cytosol, nucleus, plastid	62.13	62.28
TraesCS3B01G159100.2	Wheat	cytosol, nucleus, plastid	64.76	61.87
TraesCS3D01G141500.2	Wheat	nucleus	65.11	61.79
Os06t0722650-01	Rice	extracellular, mitochondrion, plastid	11.35	61.29
Os06t0722300-01	Rice	extracellular, mitochondrion, plastid	11.35	61.29
Os06t0720500-01	Rice	extracellular, mitochondrion, plastid	11.35	61.29
Bra030088.1-P	Field mustard	mitochondrion	8.72	59.84
Os01t0200300-01	Rice	cytosol, peroxisome	29.87	58.0
Zm00001d014252_P002	Maize	cytosol	8.84	42.53

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102595935	MapMan:15.5.3.2	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	UniProt:M1CIB6	InterPro:MEKHLA	PFAM:PF00046	PFAM:PF01852	PFAM:PF08670
EnsemblPlantsGene:PGSC0003DMG400026460	PGSC:PGSC0003DMG400026460	EnsemblPlants:PGSC0003DMT400068037	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF344	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000295D9E6	RefSeq:XP_006359469.1	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026460]

Coordinates

chr12:+:50895780..50904769

Molecular Weight (calculated)

92370.2 Da

IEP (calculated)

6.593

GRAVY (calculated)

-0.143

Length

837 amino acids

Sequence
(BLAST)

001: MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND
101: RLQKQVSQLV YENGYFRKQT QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV QMPGMKPGPD SIGIIAISHG
201: CTGMAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYTTVTDD GSFVVCERSL GNTLNGPSMP
301: QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN
401: EALNGFSSEG WSMLDNDGMD DVTILVNSSP DKLMGLNLSF SDGFTSLSNA ILCAKASMLL QSVTPAILLR FLREHRSEWV DNNIDAYSAA AVKVGPCSLP
501: GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVCHSPEDV IMPRDMFLLQ LCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP
601: NRTLDLTSAL ETGPVGSKVA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS FISSVQRVAL ALSPSNFGSV GGLRLPLGTP EAHTLARWIC
701: QSYRRFLGVE LPKLSSEGSE SILDSLWHHS DAIICCSAKA MPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC SEFPQIMQQG FACLQGGICL
801: SSMGRPVSYE KAVAWKVLNE EDTAHCISFM FVNWSFV

Best Arabidopsis Sequence Match ( AT1G52150.1 )
(BLAST)

001: MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN
101: DRLQKQVSQL VHENSYFRQH TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDASPAGLLS IAEETLAEFL SKATGTAVEW VQMPGMKPGP DSIGIIAISH
201: GCTGVAARAC GLVGLEPTRV AEIVKDRPSW FRECRAVEVM NVLPTANGGT VELLYMQLYA PTTLAPPRDF WLLRYTSVLE DGSLVVCERS LKSTQNGPSM
301: PLVQNFVRAE MLSSGYLIRP CDGGGSIIHI VDHMDLEACS VPEVLRPLYE SPKVLAQKTT MAALRQLKQI AQEVTQTNSS VNGWGRRPAA LRALSQRLSR
401: GFNEAVNGFT DEGWSVIGDS MDDVTITVNS SPDKLMGLNL TFANGFAPVS NVVLCAKASM LLQNVPPAIL LRFLREHRSE WADNNIDAYL AAAVKVGPCS
501: ARVGGFGGQV ILPLAHTIEH EEFMEVIKLE GLGHSPEDAI VPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEVSSPN
601: RTLDLASALE IGSAGTKAST DQSGNSTCAR SVMTIAFEFG IESHMQEHVA SMARQYVRGI ISSVQRVALA LSPSHISSQV GLRTPLGTPE AQTLARWICQ
701: SYRGYMGVEL LKSNSDGNES ILKNLWHHTD AIICCSMKAL PVFTFANQAG LDMLETTLVA LQDISLEKIF DDNGRKTLCS EFPQIMQQGF ACLQGGICLS
801: SMGRPVSYER AVAWKVLNEE ENAHCICFVF INWSFV

Arabidopsis Description

ATHB-15Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:B3H4G8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.